name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_141566_1
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria
|
Not on your lists |
comp(1..5148)
|
RHS repeat-associated core domain protein n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KGE8_METEX
Uncharacterized protein {ECO:0000313|EMBL:EWC60583.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5670..6320
|
2-amino-thiazoline-4-carboxylic acid hydrolase n=1 Tax=Rhizobium meliloti RepID=UPI0003133E4A
2-amino-thiazoline-4-carboxylic acid hydrolase {ECO:0000313|EMBL:KDP72687.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
atcB; ATC hydrolase
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_3
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6361..7365)
|
Putative dipeptide ABC transporter, ATP-binding protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TRZ2_TISMK
appF; putative dipeptide ABC transporter, ATP-binding protein
Putative dipeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AFK55530.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
|
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berkeley_reactor_200306_biofilm_scaffold_141566_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7362..8339)
|
Putative dipeptide ABC transporter, ATP-binding protein n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YW70_BRASO
ddpD; dipeptide ABC transporter ATP-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_5
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8336..9157)
|
ABC transporter permease protein 1 n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TRZ4_TISMK
ddpC; ABC transporter permease protein 1
ABC transporter permease protein 1 {ECO:0000313|EMBL:AFK55532.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_6
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9174..10202)
|
Binding-protein dependent transport system inner membrane protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TRZ5_TISMK
ddpB; binding-protein dependent transport system inner membrane protein
Binding-protein dependent transport system inner membrane protein {ECO:0000313|EMBL:AFK55533.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_7
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10234..11853)
|
Extracellular solute-binding protein family 5 n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TRZ6_TISMK
hbpA; extracellular solute-binding protein family 5
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:AFK55534.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_8
Pseudomonas sp. ES3-33, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12144..13799)
|
ABC transporter ATP-binding protein n=1 Tax=Pseudomonas psychrophila RepID=UPI0002EAD533
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJH78543.1}; TaxID=1628833 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. ES3-33.;"
ABC transporter ATP-binding protein
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_9
Pseudomonas sp. FGI182, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13799..14659)
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Pseudomonas sp. GM84 RepID=J2Y5I5_9PSED
Peptide ABC transporter permease {ECO:0000313|EMBL:AHD15417.1}; TaxID=1259844 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FGI182.;"
binding-protein-dependent transport systems inner membrane component
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_10
Pantoea sp. At-9b, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14656..15645)
|
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Pantoea sp. (strain At-9b) RepID=E6WM94_PANSA
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADU72529.1}; Flags: Precursor;; TaxID=592316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. (strain At-9b).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_11
Pantoea sp. At-9b, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15642..17411)
|
Extracellular solute-binding protein family 5 n=1 Tax=Pantoea sp. (strain At-9b) RepID=E6WM95_PANSA
extracellular solute-binding protein family 5
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ADU72530.1}; Flags: Precursor;; TaxID=592316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. (strain At-9b).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_12
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17745..18926
|
Acyl-CoA dehydrogenase, C-terminal domain protein n=1 Tax=Streptomyces turgidiscabies Car8 RepID=L7F2G5_9ACTO
Putative hydroxylase {ECO:0000313|EMBL:GAJ97006.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hydroxylase
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_13
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18943..19515
|
Monooxygenase n=3 Tax=Amycolatopsis mediterranei RepID=D8I6I3_AMYMU
Putative oxidoreductase {ECO:0000313|EMBL:GAJ97005.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
monooxygenase
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_14
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19669..20571)
|
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZN50_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:GAJ97004.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
LuxR family transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_15
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21068..22822
|
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZW3_CONWI
Putative oxidoreductase {ECO:0000313|EMBL:GAJ96993.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_16
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22819..23283
|
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B6C55C
Uncharacterized protein {ECO:0000313|EMBL:ENO87297.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_17
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23286..23963
|
Uncharacterized protein {ECO:0000313|EMBL:GAJ96994.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_18
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24340..25143
|
2-oxopent-4-enoate hydratase (EC:4.2.1.80)
2-oxopent-4-enoate hydratase n=1 Tax=Frankia sp. CN3 RepID=G6H6T4_9ACTO
2-hydroxypenta-2,4-dienoate hydratase CmtF {ECO:0000313|EMBL:GAJ96998.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_19
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25140..26078
|
Acetaldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042164}; EC=1.2.1.10 {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042125};; Acetaldehyde dehydrogenase [acetylating] {ECO:0000256|HAMAP-Rule:MF_01657}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
acetaldehyde dehydrogenase (EC:1.2.1.10)
Acetaldehyde dehydrogenase n=1 Tax=Frankia sp. CN3 RepID=G6H6T3_9ACTO
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_20
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26078..27091
|
4-hydroxy-2-oxovalerate aldolase {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546}; Short=HOA {ECO:0000256|HAMAP-Rule:MF_01656};; EC=4.1.3.39 {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546};; 4-hydroxy-2-keto-pentanoic acid aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; 4-hydroxy-2-oxopentanoate aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
4-hydroxy-2-oxovalerate aldolase n=1 Tax=Frankia sp. CN3 RepID=G6H6T2_9ACTO
4-hydroxy-2-oxovalerate aldolase
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_21
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
27173..28183
|
Metapyrocatechase (Catechol 2,3-dioxygenase) n=3 Tax=Amycolatopsis mediterranei RepID=D8I6I0_AMYMU
Putative 3,4-dihydroxyphenylacetate 2,3-dioxygenase {ECO:0000313|EMBL:GAJ97001.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
metapyrocatechase (catechol 2,3-dioxygenase)
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_22
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
28201..29061
|
Alpha/beta hydrolase n=3 Tax=Amycolatopsis mediterranei RepID=D8I6I1_AMYMU
Putative hydrolase {ECO:0000313|EMBL:GAJ97002.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
alpha/beta hydrolase
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_23
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
29237..29989
|
Putative uncharacterized protein n=1 Tax=Amycolatopsis mediterranei (strain S699) RepID=G0FNG9_AMYMS
Uncharacterized protein {ECO:0000313|EMBL:GAJ97026.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_24
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
30060..31703
|
Uncharacterized protein n=1 Tax=Ralstonia syzygii R24 RepID=G3A7G5_9RALS
Uncharacterized protein {ECO:0000313|EMBL:GAJ97113.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_25
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
31859..32446
|
Transcriptional regulator, TetR family n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EQS5_METSB
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACK49346.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_26
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
32892..35816
|
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1)
ribonucleotide-diphosphate reductase subunit alpha n=1 Tax=Hoeflea sp. 108 RepID=UPI00035F4871
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_27
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
35837..36964
|
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
ribonucleotide-diphosphate reductase subunit beta (EC:1.17.4.1)
ribonucleotide-diphosphate reductase subunit beta n=1 Tax=Xanthobacteraceae RepID=UPI00035C7CA8
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_28
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(37067..39412)
|
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC:2.1.1.14)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HUJ9_9RHIZ
|
|
berkeley_reactor_200306_biofilm_scaffold_141566_29
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
40090..41055
|
Iron-siderophore ABC transporter substrate-binding protein n=2 Tax=Rhizobium etli RepID=S5SK65_RHIET
ferrichrome ABC transporter substrate-binding protein
Probable ferrichrome ABC transporter, substrate-binding protein {ECO:0000313|EMBL:ABC91454.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
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|
berkeley_reactor_200306_biofilm_scaffold_141566_30
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
41112..42080
|
Putative ferrichrome ABC transporter, permease protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U893_9RHIZ
Putative ferrichrome ABC transporter, permease protein {ECO:0000313|EMBL:ENN86453.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
ferrichrome ABC transporter permease
|