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berkeley_reactor_200306_biofilm_scaffold_24673

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Displaying items 1-30 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_24673_1
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..166
DNA (165bp) protein (55aa)
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IR66_RHIML
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEG07838.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
berkeley_reactor_200306_biofilm_scaffold_24673_2
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(199..1209)
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003810162
LacI family transcriptional regulator {ECO:0000313|EMBL:KGM31110.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
LacI family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_24673_3
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1399..2346
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI000377D03E
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM31109.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
sugar ABC transporter substrate-binding protein
berkeley_reactor_200306_biofilm_scaffold_24673_4
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2354..3916
DNA (1563bp) protein (521aa)
Putative ribose/galactose/methyl galactoside import ATP-binding protein 1 {ECO:0000313|EMBL:CCV15266.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CCV15266.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI000379000A
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_24673_5
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3913..4905
DNA (993bp) protein (331aa)
Monosaccharide-transporting ATPase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EWE1_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:KGM35355.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
inner-membrane translocator
berkeley_reactor_200306_biofilm_scaffold_24673_6
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4915..5754
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YHN0_MESOW
Beta-lactamase {ECO:0000313|EMBL:KGM35354.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_24673_7
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5852..6133)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000374BBA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAX22131.1}; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
berkeley_reactor_200306_biofilm_scaffold_24673_8
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6130..6357)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S740_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD90017.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_24673_9
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6484..6879)
DNA (396bp) protein (132aa)
Transcriptional regulator n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08ZP1_STIAD
ArsR family transcriptional regulator {ECO:0000313|EMBL:AJR22473.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_24673_10
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7002..7457
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00035C9F5E
(2Fe-2S)-binding domain-containing protein
(2Fe-2S)-binding domain protein {ECO:0000313|EMBL:ACL59681.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_24673_11
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7470..9686
DNA (2217bp) protein (739aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036DEC4A
Twin-arginine translocation pathway signal protein {ECO:0000313|EMBL:KGM32412.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase protein
berkeley_reactor_200306_biofilm_scaffold_24673_12
Pseudomonas sp. W15Feb9B, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9752..10324
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036CD886
Uncharacterized protein {ECO:0000313|EMBL:KIK87875.1}; TaxID=550743 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. W15Feb9B.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_24673_13
unknown

Not on your lists

comp(10336..10587)
DNA (252bp) protein (84aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_24673_14
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10750..11424
DNA (675bp) protein (225aa)
PREDICTED: probable transcriptional regulator ycf27-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C134C0
Transcriptional regulatory protein tctD {ECO:0000313|EMBL:CDX25825.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
response regulator receiver
berkeley_reactor_200306_biofilm_scaffold_24673_15
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11414..12814
DNA (1401bp) protein (467aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
UPI0003CE2998 related cluster n=1 Tax=unknown RepID=UPI0003CE2998
integral membrane sensor signal transduction histidine kinase
berkeley_reactor_200306_biofilm_scaffold_24673_16
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12972..13796
DNA (825bp) protein (275aa)
Hydrolase (HAD superfamily) protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B8Q2_9RHIZ
Hydrolase (HAD superfamily) protein
Hydrolase (HAD superfamily) protein {ECO:0000313|EMBL:AGK56921.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
berkeley_reactor_200306_biofilm_scaffold_24673_17
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13840..15402)
DNA (1563bp) protein (521aa)
FAD-dependent oxidoreductase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037152F3
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KJC60636.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
putative oxygenase
berkeley_reactor_200306_biofilm_scaffold_24673_18
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15506..16132
DNA (627bp) protein (209aa)
Transcriptional regulator, TetR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHV2_RHITR
TetR family transcriptional regulator {ECO:0000313|EMBL:KGM31762.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
transcriptional regulator, TetR family
berkeley_reactor_200306_biofilm_scaffold_24673_19
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16204..17082)
DNA (879bp) protein (293aa)
ABC transporter permease n=1 Tax=Rhizobium loti RepID=UPI000361A005
ABC transporter, permease {ECO:0000313|EMBL:CDX19480.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_24673_20
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17095..17904)
DNA (810bp) protein (270aa)
PREDICTED: sulfate/thiosulfate import ATP-binding protein cysA-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C186D1
Uncharacterized protein {ECO:0000313|EMBL:CDX19479.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_24673_21
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17997..19040)
DNA (1044bp) protein (348aa)
UPI0003CDD699 related cluster n=1 Tax=unknown RepID=UPI0003CDD699
Nitrate ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESY91751.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
ABC transporter substrate-binding protein
berkeley_reactor_200306_biofilm_scaffold_24673_22
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19179..19940)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003778763
virulence factor family protein
Virulence factor family protein {ECO:0000313|EMBL:AGK60007.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
berkeley_reactor_200306_biofilm_scaffold_24673_23
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19995..20849
DNA (855bp) protein (285aa)
Outer membrane protein V n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZD9_9RHIZ
Outer membrane protein V {ECO:0000313|EMBL:EIM29331.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
MltA-interacting MipA family protein
berkeley_reactor_200306_biofilm_scaffold_24673_24
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20862..21326)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QAF2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF60824.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_24673_25
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21447..22778)
DNA (1332bp) protein (444aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Rhizobium sp. Pop5 RepID=K0VVC5_9RHIZ
two-component sensor histidine kinase protein
berkeley_reactor_200306_biofilm_scaffold_24673_26
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22775..23443)
DNA (669bp) protein (223aa)
Two component transcriptional regulator, winged helix family Environmental Information Processing n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V5T8_9RHIZ
Two component transcriptional regulator, winged helix family Environmental Information Processing {ECO:0000313|EMBL:ENN88521.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
two-component response regulator protein
berkeley_reactor_200306_biofilm_scaffold_24673_27
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23624..24220
DNA (597bp) protein (199aa)
PA-phosphatase n=1 Tax=Burkholderia bryophila RepID=UPI0003719D83
Phosphoesterase PA-phosphatase related {ECO:0000313|EMBL:EEG10525.1}; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans 2002.;"
PAP2 superfamily protein
berkeley_reactor_200306_biofilm_scaffold_24673_28
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24401..25948
DNA (1548bp) protein (516aa)
ABC transporter, substrate binding protein (Oligopeptide) n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PSD1_9RHIZ
ABC transporter, substrate binding protein (Oligopeptide) {ECO:0000313|EMBL:CCM76738.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
extracellular solute-binding protein
berkeley_reactor_200306_biofilm_scaffold_24673_29

Not on your lists

25921..26901
DNA (981bp) protein (327aa)
Alpha/beta hydrolase fold-3 domain protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PSD6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKN95794.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
alpha/beta hydrolase
berkeley_reactor_200306_biofilm_scaffold_24673_30
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26938..27843)
DNA (906bp) protein (302aa)
Virulence protein n=2 Tax=Xanthomonas campestris pv. campestris RepID=Q4UVP9_XANC8
Type IV secretory pathway, VirJ component
Virulence protein {ECO:0000313|EMBL:AAM41583.1}; TaxID=190485 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 /; NCPPB 528 / LMG 568 / P 25).;"
Displaying items 1-30 of 81 in total

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