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berkeley_reactor_200306_biofilm_scaffold_111575

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Displaying items 91-120 of 156 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_111575_90
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(94080..94553)
DNA (474bp) protein (158aa)
UPI0003D00FA0 related cluster n=1 Tax=unknown RepID=UPI0003D00FA0
Uncharacterized protein {ECO:0000313|EMBL:CDX36744.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
putative protein yidB
berkeley_reactor_200306_biofilm_scaffold_111575_91
Mesorhizobium sp. LSJC285A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

94757..95014
DNA (258bp) protein (86aa)
transglycosylase n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A16D6C
Transglycosylase {ECO:0000313|EMBL:ESW91463.1}; TaxID=1287338 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC285A00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_111575_92
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95106..95624)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D75424
Thioesterase {ECO:0000313|EMBL:KFG69101.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_111575_93
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

95813..97225
DNA (1413bp) protein (471aa)
D-lactate dehydrogenase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000381A716
FAD linked oxidase domain-containing protein
FAD linked oxidase domain protein {ECO:0000313|EMBL:ACA16499.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_111575_94
unknown

Not on your lists

comp(97350..97613)
DNA (264bp) protein (88aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_111575_95
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

97839..101603
DNA (3765bp) protein (1255aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI000373014D
AsmA family
AsmA family {ECO:0000313|EMBL:ADZ69795.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
berkeley_reactor_200306_biofilm_scaffold_111575_96
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(101835..102050)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IFW7_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS66910.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
berkeley_reactor_200306_biofilm_scaffold_111575_97
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(102059..102247)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HQ58_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKV30566.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_111575_98
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(102361..103755)
DNA (1395bp) protein (465aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
fumarate hydratase n=1 Tax=Methylopila sp. M107 RepID=UPI00035DDC2C
class II fumarate hydratase
berkeley_reactor_200306_biofilm_scaffold_111575_99
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

104338..104949
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IF18_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL55729.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_111575_100
Saccharomonospora cyanea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(105338..106066)
DNA (729bp) protein (243aa)
transcriptional regulator n=1 Tax=Saccharomonospora halophila RepID=UPI00037EB74E
Transcriptional regulator {ECO:0000313|EMBL:EHR59919.1}; TaxID=882082 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora cyanea NA-134.;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_111575_101
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

106316..107152
DNA (837bp) protein (279aa)
Putative amidohydrolase n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) RepID=Q3IW15_RHOS4
putative amidohydrolase
Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence {ECO:0000313|EMBL:ABA81269.1}; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
berkeley_reactor_200306_biofilm_scaffold_111575_102
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

107178..108149
DNA (972bp) protein (324aa)
cyclase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037418B0
Cyclase family protein {ECO:0000313|EMBL:AID28145.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
cyclase
berkeley_reactor_200306_biofilm_scaffold_111575_103
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

108298..109386
DNA (1089bp) protein (363aa)
Putative ATP-binding component of ABC transporter n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M4V8_RHIL3
putative ATP-binding component of ABC transporter
Putative ATP-binding component of ABC transporter {ECO:0000313|EMBL:AHK46378.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
berkeley_reactor_200306_biofilm_scaffold_111575_104
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

109383..110318
DNA (936bp) protein (312aa)
ABC transporter permease n=1 Tax=Rhizobium loti RepID=UPI000377E99A
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:AID28135.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
putative spermidine/putrescine ABC transporter, permease protein
berkeley_reactor_200306_biofilm_scaffold_111575_105
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

110327..111175
DNA (849bp) protein (283aa)
Spermidine/putrescine ABC transporter n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QS97_9RHIZ
spermidine/putrescine ABC transporter permease
Spermidine/putrescine ABC transporter {ECO:0000313|EMBL:EKF57907.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
berkeley_reactor_200306_biofilm_scaffold_111575_106
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

111276..112511
DNA (1236bp) protein (412aa)
ABC transporter, substrate-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXW0_RHITR
ABC transporter, substrate-binding protein
Putative substrate-binding protein component of ABC transporter {ECO:0000313|EMBL:ENN88476.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
berkeley_reactor_200306_biofilm_scaffold_111575_107
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

112609..113697
DNA (1089bp) protein (363aa)
ABC transporter nucleotide binding/ATPase protein (Spermidine/putrescine) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K224_AGRVS
ABC transporter nucleotide binding/ATPase (spermidine/putrescine)
ABC transporter nucleotide binding/ATPase protein (Spermidine/putrescine) {ECO:0000313|EMBL:ACM38922.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
berkeley_reactor_200306_biofilm_scaffold_111575_108
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113891..115378)
DNA (1488bp) protein (496aa)
Peptidase Do n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IHW4_9BRAD
Peptidase Do {ECO:0000313|EMBL:ERF83325.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
peptidase S1C, Do
berkeley_reactor_200306_biofilm_scaffold_111575_109
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(115510..115710)
DNA (201bp) protein (67aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IYG3_RHOP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD06747.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
berkeley_reactor_200306_biofilm_scaffold_111575_110
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(115785..116708)
DNA (924bp) protein (308aa)
Protein HflC n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IAW2_AZOC5
hflC; HflC protein
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_111575_111
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(116705..117832)
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000376811B
hflK; membrane bound protease
Putative membrane bound protease protein {ECO:0000313|EMBL:ADZ69808.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
berkeley_reactor_200306_biofilm_scaffold_111575_112
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(118252..119184)
DNA (933bp) protein (311aa)
tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031A5948
berkeley_reactor_200306_biofilm_scaffold_111575_113
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

119188..120078
DNA (891bp) protein (297aa)
phosphoserine phosphatase SerB (EC:3.1.3.3)
Phosphoserine phosphatase SerB n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAA4_9BRAD
Phosphoserine phosphatase SerB {ECO:0000313|EMBL:EKS36545.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
berkeley_reactor_200306_biofilm_scaffold_111575_114
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(120193..121578)
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AG83_AZOBR
Glycerophosphodiester phosphodiesterase {ECO:0000313|EMBL:KGM34198.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
glycerophosphodiester phosphodiesterase
berkeley_reactor_200306_biofilm_scaffold_111575_115
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121717..122658
DNA (942bp) protein (314aa)
thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase {ECO:0000255|HAMAP-Rule:MF_00008}; Short=TS {ECO:0000255|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000255|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000255|HAMAP-Rule:MF_00008};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Thymidylate synthase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=TYSY_SPHWW
berkeley_reactor_200306_biofilm_scaffold_111575_116
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

122655..123203
DNA (549bp) protein (183aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
dihydrofolate reductase (EC:1.5.1.3)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI0002E0ED76
berkeley_reactor_200306_biofilm_scaffold_111575_117
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

123576..125228
DNA (1653bp) protein (551aa)
Nitrate/nitrite transporter n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VSL7_9RHIZ
Nitrate/nitrite transporter {ECO:0000313|EMBL:EJN03115.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
MFS transporter
berkeley_reactor_200306_biofilm_scaffold_111575_118
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

125588..125965
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FAFE6F
Uncharacterized protein {ECO:0000313|EMBL:CDX60222.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_111575_119
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

126006..126398
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000314BC44
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
crcB-like family protein
Displaying items 91-120 of 156 in total

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