ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_111575_115

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 121717..122658

Top 3 Functional Annotations

Value Algorithm Source
thymidylate synthase (EC:2.1.1.45) similarity KEGG
DB: KEGG
  • Identity: 64.8
  • Coverage: 307.0
  • Bit_score: 444
  • Evalue 2.30e-122
Thymidylate synthase {ECO:0000255|HAMAP-Rule:MF_00008}; Short=TS {ECO:0000255|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000255|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000255|HAMAP-Rule:MF_00008};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.8
  • Coverage: 307.0
  • Bit_score: 444
  • Evalue 1.10e-121
Thymidylate synthase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=TYSY_SPHWW similarity UNIREF
DB: UNIREF100
  • Identity: 64.8
  • Coverage: 307.0
  • Bit_score: 444
  • Evalue 8.00e-122

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Sphingomonas wittichii → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 942
ATGCTCGACCGCGCCCGCACCAGCCATCCGGAACGCCGTTATCTCGACCTGATGGAGCGGGTCTGGCGGGAGGGCTCGCCGCGCCGCGACCGCACCGGCGTCGGCACCCGCGCCGTGTTCGGCGAGCGGCTGGCCTTCGATCTCTCCGACGGCACCATCCCGCTCCTCACCACCAAGCGGGTCTCCTGGAAGACGATCGTGCGGGAGCTCCTGTGGTTTCTGGGCGGCGAGACCAATATCCGTCCGCTGCTGCAGGACGGGGTCACCATCTGGACCGACTGGCCGCTGGCGCGCTACCGGCGCGAGACGGGCGAGGCGGTGACGCAGGCGGCGTTCGAGGCGCGGATCGTGGCGGACGAGGCCTTTGCGCAGGCGTGGGGCGACCTCGGCCCGGTCTACGGGGCGCAATGGCGCCATTGGCCGCGCTACGAGCCGGCGGGCGAGGGGCTGTTCCGCCGCACGCCCGAGGGCATCGACCAGATCAGCCGGCTGGTCCACGACATCCGCACCAACCCGAGCTCGCGCCGGCTCCTGTTCACGGGCTGGAACGTGGCCGAGCTCGACGGCATGGCGCTGCCGCCCTGCCACATGACCTATCAATATTTCGTCGCGGACGGGCGGCTCTCCGGCCTCCTGCACCAGCGCTCCTGCGATGTCGGCCTGGGCGTGCCCTACAATCTGGTCACGGCCGCGCTTCTCCTGCGCATGCTGGCCCAGCAATGCGACCTGGAGCCGGGGGAGTTCGTCTGGTTCGGCGGCGACGTGCATCTCTACGAGAACCATGGCGAGCTTGTCGCCACCCAGCTCGCCCGCGAGCCGCGCCCGTGGCCGACCCTCGCCTTCGCCCGGCGGCCGGCGTCGATCCTGGACTACCGCTTCGAGGATTTCGTCGTCGAAGGCTATGATCCGCACCCCGCCATCCCTGCGCCGATCGCGGTATGA
PROTEIN sequence
Length: 314
MLDRARTSHPERRYLDLMERVWREGSPRRDRTGVGTRAVFGERLAFDLSDGTIPLLTTKRVSWKTIVRELLWFLGGETNIRPLLQDGVTIWTDWPLARYRRETGEAVTQAAFEARIVADEAFAQAWGDLGPVYGAQWRHWPRYEPAGEGLFRRTPEGIDQISRLVHDIRTNPSSRRLLFTGWNVAELDGMALPPCHMTYQYFVADGRLSGLLHQRSCDVGLGVPYNLVTAALLLRMLAQQCDLEPGEFVWFGGDVHLYENHGELVATQLAREPRPWPTLAFARRPASILDYRFEDFVVEGYDPHPAIPAPIAV*