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berkeley_reactor_200306_biofilm_scaffold_106678_2

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(1460..2455)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00030F00F2 similarity UNIREF
DB: UNIREF100
  • Identity: 55.7
  • Coverage: 296.0
  • Bit_score: 313
  • Evalue 1.30e-82
LysR substrate binding domain protein {ECO:0000313|EMBL:EFH12022.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.0
  • Coverage: 300.0
  • Bit_score: 304
  • Evalue 1.50e-79
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 48.2
  • Coverage: 303.0
  • Bit_score: 246
  • Evalue 9.50e-63

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Taxonomy

Roseomonas cervicalis → Roseomonas → Rhodospirillales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 996
ATGATAGATGCTCTGACACTCACCCAGCTCAAGGTGCTGGTCGCCGTGGTCGAGACCGGCAGCTTCTCCGGCGCGGCGCGCCGGCTCGGCCGCGTCCAGTCCGCCATCAGCCAGACGGTGCAGACCCTGGAGGAGACGCTCAGCCTTGTCCTGTTCGACCGGTCGGGCAAGACGCCTGTGGTCACCGAAGCCGGCCTGGCCATGGTCGAGGAGGCGCGCCAGGTGCTGCGCCGCGCCGCCGCCCTGCGCCACCGGGCCGAGGCCATCGCCGACGGGGTGGAGCCGGAGCTGACCCTGGCGGTCGACGCGGTCTTTCCCAGCGAGGTGCTGACCGCGAGCCTCAAGGCGCTGCAGCAGACCTTCCCCGGCCTGCCGGTGGCCCTGTTCACCGAGGGCCTCGGCGCGCCGGAGCAGCGCCTGCGCGACGGCATGGTGCGGCTGGCGATCTACACCATCCTCGCCACCGGCGCCGAGGACCTCGAAGCCGACCTGCTCACCCACATCGCCATGGTGCCCGTGGTCGCCGCCGGCCATCCCCTGGCGCAGGAGCCCGGGCCGGTCGGCCGCGCCGCGCTGGAGCGCCACACGCAGCTCATCCTCACCGACCGCTCGTCGCTGACGCCGAACCTGCGCGGCCACATCTACTCCCCGCGGGTCTGGCGCTTCGCCGACCTCACCACCCGGCTCGACTTCCTCCTGGCCGGCTTCGGCTGGTGCCACATGCCGATCCACCTGGTCGAGGAGCATATCGACGCCGGCCGGCTGCGCCCCCTCGTCATCCCCGAGAGCGAAGGCTTCGTGCTGGCCCTGCACGCGGTGCGCCGCGGCGACGACCGGCTCGGCCGCGCCGGACGCTGGCTGATCGCCGACCTGCGCGCCCGCCTCGCCGTGTGGCGGCCGTGCAAGCGCGCCGCTCCCGGCGCATCGCTGGCCGGCCTGCTCCGGCCGTCGGAGCCGGCCCGGCCGATCGCGGCTTTAACGAGCGCTCAACCATAA
PROTEIN sequence
Length: 332
MIDALTLTQLKVLVAVVETGSFSGAARRLGRVQSAISQTVQTLEETLSLVLFDRSGKTPVVTEAGLAMVEEARQVLRRAAALRHRAEAIADGVEPELTLAVDAVFPSEVLTASLKALQQTFPGLPVALFTEGLGAPEQRLRDGMVRLAIYTILATGAEDLEADLLTHIAMVPVVAAGHPLAQEPGPVGRAALERHTQLILTDRSSLTPNLRGHIYSPRVWRFADLTTRLDFLLAGFGWCHMPIHLVEEHIDAGRLRPLVIPESEGFVLALHAVRRGDDRLGRAGRWLIADLRARLAVWRPCKRAAPGASLAGLLRPSEPARPIAALTSAQP*