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berkeley_reactor_200306_biofilm_scaffold_106678

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_106678_1
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1368)
DNA (1368bp) protein (456aa)
DNA translocase FtsK n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IZF8_POLGS
ftsK2; DNA translocase FtsK
DNA translocase FtsK {ECO:0000313|EMBL:ADZ68581.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
berkeley_reactor_200306_biofilm_scaffold_106678_2
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1460..2455)
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00030F00F2
LysR substrate binding domain protein {ECO:0000313|EMBL:EFH12022.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
LysR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_106678_3
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2547..3179
DNA (633bp) protein (211aa)
Putative NADH dehydrogenase/NAD(P)H nitroreductase LIG30_3858 {ECO:0000256|HAMAP-Rule:MF_01204}; EC=1.-.-.- {ECO:0000256|HAMAP-Rule:MF_01204};; TaxID=1192124 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. lig30.;"
Putative NADH dehydrogenase/NAD(P)H nitroreductase MettrDRAFT_2960 n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QT16_METTR
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_106678_4
Halomonas sp. GFAJ-1, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3186..3827)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003750078
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor {ECO:0000313|EMBL:EHK60729.1}; TaxID=1118153 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. GFAJ-1.;"
chemotaxis protein
berkeley_reactor_200306_biofilm_scaffold_106678_5
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3985..4728
DNA (744bp) protein (248aa)
Rhomboid family protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9G5_STAND
rhomboid family protein
Rhomboid family protein {ECO:0000313|EMBL:ADH90727.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_106678_6
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4930..5679
DNA (750bp) protein (250aa)
electron transfer flavoprotein subunit beta n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000309AFA4
electron transfer flavoprotein beta subunit-like protein
Electron transfer flavoprotein beta subunit-like protein {ECO:0000313|EMBL:ADZ68555.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
berkeley_reactor_200306_biofilm_scaffold_106678_7
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5702..6646
DNA (945bp) protein (315aa)
Electron transfer flavoprotein subunit alpha n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=ETFA_BRADU
etfL; electron transfer flavoprotein large subunit
Electron transfer flavoprotein subunit alpha; Short=Alpha-ETF;; Electron transfer flavoprotein large subunit; Short=ETFLS;; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
berkeley_reactor_200306_biofilm_scaffold_106678_8
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6776..7252
DNA (477bp) protein (159aa)
Ferric uptake regulator, Fur family n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IM26_XANP2
ferric uptake regulator family protein
Ferric uptake regulator, Fur family {ECO:0000313|EMBL:ABS69069.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
berkeley_reactor_200306_biofilm_scaffold_106678_9
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(7324..9471)
DNA (2148bp) protein (716aa)
hypothetical protein n=1 Tax=Woodsholea maritima RepID=UPI00036E39D4
Diguanylate cyclase {ECO:0000313|EMBL:KIF13017.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
diguanylate cyclase/phosphodiesterase
berkeley_reactor_200306_biofilm_scaffold_106678_10
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9599..11179)
DNA (1581bp) protein (527aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00037D201A
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
integral membrane protein MviN
berkeley_reactor_200306_biofilm_scaffold_106678_11
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11322..12320
DNA (999bp) protein (333aa)
carbohydrate kinase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034B6AEF
Fructokinase {ECO:0000313|EMBL:EJW10707.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
PfkB protein
berkeley_reactor_200306_biofilm_scaffold_106678_12
unknown

Not on your lists

comp(12286..12615)
DNA (330bp) protein (110aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_106678_13
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12680..13591)
DNA (912bp) protein (304aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI00037E5136
pecT; HTH-type transcriptional regulator pecT Pectinase gene transcriptional regulator
HTH-type transcriptional regulator pecT Pectinase gene transcriptional regulator {ECO:0000313|EMBL:CDM59155.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
berkeley_reactor_200306_biofilm_scaffold_106678_14
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13718..14110
DNA (393bp) protein (131aa)
putative tautomerase yrdN (EC:5.3.2.-)
decarboxylase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036D88A5
Tautomerase enzyme {ECO:0000313|EMBL:EJL48668.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
berkeley_reactor_200306_biofilm_scaffold_106678_15
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14107..14610
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HSE0_9RHIZ
Cupin {ECO:0000313|EMBL:KJF72865.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_106678_16
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14607..15161
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000372C149
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF85604.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
berkeley_reactor_200306_biofilm_scaffold_106678_17
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15208..16212)
DNA (1005bp) protein (335aa)
glyoxylate reductase (EC:1.1.1.26)
Lactate dehydrogenase-like oxidoreductase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYU7_9RHIZ
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:KFG68096.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
berkeley_reactor_200306_biofilm_scaffold_106678_18
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16374..17105
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IJ22_AZOC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF86235.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_106678_19
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17155..17772
DNA (618bp) protein (206aa)
trpF; N-(5'phosphoribosyl)anthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IWS1_RHOCS
berkeley_reactor_200306_biofilm_scaffold_106678_20
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17782..19248)
DNA (1467bp) protein (489aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00035C2724
Uncharacterized protein {ECO:0000313|EMBL:AID30349.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_106678_21
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19372..19593)
DNA (222bp) protein (74aa)
Cation transporter {ECO:0000313|EMBL:KFG68842.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
berkeley_reactor_200306_biofilm_scaffold_106678_22
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19637..19888)
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000380A855
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR59405.1}; Flags: Precursor;; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
berkeley_reactor_200306_biofilm_scaffold_106678_23
unknown

Not on your lists

20099..20284
DNA (186bp) protein (62aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_106678_24
unknown

Not on your lists

comp(20386..20817)
DNA (432bp) protein (144aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_106678_25
Mycobacterium tuberculosis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21116..22645)
DNA (1530bp) protein (510aa)
hypothetical protein n=1 Tax=Brachybacterium squillarum RepID=UPI0002629CD7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KCN18365.1}; TaxID=1423445 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source="Mycobacterium tuberculosis BTB05-013.;"
berkeley_reactor_200306_biofilm_scaffold_106678_26
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(22733..23944)
DNA (1212bp) protein (404aa)
arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase (EC:2.6.1.-)
UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase {ECO:0000313|EMBL:CBK40650.1}; EC=2.6.1.- {ECO:0000313|EMBL:CBK40650.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBP1_9BACT
berkeley_reactor_200306_biofilm_scaffold_106678_27
GWF2_Alphaproteobacteria_58_20_curated, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23961..26510)
DNA (2550bp) protein (850aa)
Glycosyltransferase n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8Z1R5_9GAMM
putative glycosyltransferase, group 1 family protein
Tax=GWF2_Alphaproteobacteria_58_20_curated
berkeley_reactor_200306_biofilm_scaffold_106678_trna_1
unknown

Not on your lists

comp(26768..26840)
DNA (73bp)
transferRNA Ala
berkeley_reactor_200306_biofilm_scaffold_106678_28
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26973..27374)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Ancylobacter sp. FA202 RepID=UPI00036755F5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH91132.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_106678_29
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27582..28919
DNA (1338bp) protein (446aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Xanthobacteraceae RepID=UPI00037A7B3F
3-phosphoshikimate 1-carboxyvinyltransferase
Displaying items 1-30 of 41 in total

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