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berkeley_reactor_200306_biofilm_scaffold_106678_13

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(12680..13591)

Top 3 Functional Annotations

Value Algorithm Source
LysR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI00037E5136 similarity UNIREF
DB: UNIREF100
  • Identity: 77.7
  • Coverage: 292.0
  • Bit_score: 448
  • Evalue 3.10e-123
pecT; HTH-type transcriptional regulator pecT Pectinase gene transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 75.0
  • Coverage: 304.0
  • Bit_score: 448
  • Evalue 1.50e-123
HTH-type transcriptional regulator pecT Pectinase gene transcriptional regulator {ECO:0000313|EMBL:CDM59155.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.0
  • Coverage: 304.0
  • Bit_score: 448
  • Evalue 7.50e-123

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Taxonomy

Rhizobium sp. LPU83 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 912
ATGCCACGGGTCACTTTCGATCTCGACGTCCTGCGCAGCTTCGTCACCGGCATGGAGCTCGGCAGCTTCGCCAAGGCGGCGGACCGGCTCGGCCGCTCGACCTCGGCGGTGAGCGCCCAGCTCAAGAAGCTGGAGGAGCAGGCGGGGACGGCGGTGTTCCGCAAGGCCGGGCGCGGCCTGGCGCTGACCGAGGCGGGCGAGACCATGCTCGCCTATGCCCGACGCCTGCTCGATCTCAACGACGAGGCGGCCGCCGCGCTCCGCGGCATCGAGTTGGAAGGCTGGGTGCGCCTCGGCCTGCAGGAGGATTTCGGCGAGAGCCTGCTGCCGGCCGTACTCGGCCGTTTCGCCCGCGCCCATCCGCGGGTGCGTATCGAGGCGCGCGTGGTGCGCAATGCCGAGCTGGTCGAACGGGTGACGGCGGGCCGGCTCGATCTCGCCCTCGCCTGGAGCACCGGCCTGCCGACCCCGCATTGCGAGCCGGTGCTCGATCTGCCGATGCGCTGGATCGGGCCGGCGGAGGGCAGCGGGCCGCTGCCCGCGGGCGCCGAGGCGCTGCCGCTGGCCGCCCTGGAGGCGCCGTGCCAGCTCAGGGCCGCCGCCACGGCGGCGTTGGACCGCGCCGGCATCGCCTGGCGCCTCGCCTTCGTCAGCCCGAGCCTGGCCGGGCTCTGGGCTGCGGCCGCCGCCGGGCTCGGCATCACCGTCCGCACGCCCGTCGGCCTGCCTGCGAGCGTGCGGGCCTTGACGCCGGGGGAGGGCGGCCTGCCGCCGCTGCCGAGGCTCGGCCTCGTCCTGCACCGTGCCGAGGCCGAGCCGGGGCCGGCCGCCACCCGCCTCGCCGAGATCCTGCTGCAGGCGGTGCGCGGCGCGGCTCCGGCCGCCGCCCCGCGCGGCGCGGAGGCCGCATGA
PROTEIN sequence
Length: 304
MPRVTFDLDVLRSFVTGMELGSFAKAADRLGRSTSAVSAQLKKLEEQAGTAVFRKAGRGLALTEAGETMLAYARRLLDLNDEAAAALRGIELEGWVRLGLQEDFGESLLPAVLGRFARAHPRVRIEARVVRNAELVERVTAGRLDLALAWSTGLPTPHCEPVLDLPMRWIGPAEGSGPLPAGAEALPLAALEAPCQLRAAATAALDRAGIAWRLAFVSPSLAGLWAAAAAGLGITVRTPVGLPASVRALTPGEGGLPPLPRLGLVLHRAEAEPGPAATRLAEILLQAVRGAAPAAAPRGAEAA*