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berkeley_reactor_200306_biofilm_scaffold_102636_29

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 29628..30392

Top 3 Functional Annotations

Value Algorithm Source
Pca regulon regulatory protein PcaR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2T5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 54.8
  • Coverage: 250.0
  • Bit_score: 270
  • Evalue 1.70e-69
Pca regulon regulatory protein PcaR {ECO:0000313|EMBL:EYR83641.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.8
  • Coverage: 250.0
  • Bit_score: 270
  • Evalue 2.30e-69
pcaR; Transcription activator of the pcaIJF genes,IclR family similarity KEGG
DB: KEGG
  • Identity: 55.4
  • Coverage: 249.0
  • Bit_score: 266
  • Evalue 6.80e-69

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 765
ATGAGCGACGAACGTCCCGGAGACATGATGGGAGGCTTCGCCAAGGGCCTCTCGGTGCTCGGCGCCTTCGGCCAGGGCCATGAGCGCCTGACCATCGCGGCGGCGGCGCGGCTGGCCGGGCTCGACCGGGCGACGACGCGCCGCTGCCTGATCACGCTGCAGCGGCTCGGCTTCGCCACCTTCGACGGCAAGTGCTACGCCCTCACGGCGCGGGTCCTGACGCTCGGCCATGCCTATCTCGCCTCGACGCCGCTGCCGGAGCAGCTGCAGCCCTTTCTCGACCGGCTCGCGGGCACGATTCAGGAATCCTGCTCCTGCTCGATCCTCGACGGCACCCATATCGTCTACATCGCCCGGGCGGCCCAGCGCCGCGTCATGTCGATCAGCCTGGGTGTCGGCAGCAGGCTTCCCGCCTATTGCTCCTCCATGGGGCGGGTGCTGCTCGCCGCGATGACGGACGAGGAAGCCCTGGCGCTGATCGACCGCTCGGACCTGCAGGCGCTCACGGCGCGGACCCTGACGAAGCGGGAGGACCTCGCCACCGAGATCGCCAGGGTGCGGCGCGAGGGCTATTGCATCGTCGACGAGGAGCTCGAGATCGGGCTTCGCTCCTTGGCCGTTCCCATCCGCAGCCGGTCCGGCCGCGTGGTGGCGGCGCTGAACACCGGCGTGCAGACGAGCCGCGTCGGCCTGGACCGCCTGCGCGCCGAGTTCCTGCCGAACCTGCTCGAGGTCCAGGCCCAGCTCGCGGCCGTCATCGCCTGA
PROTEIN sequence
Length: 255
MSDERPGDMMGGFAKGLSVLGAFGQGHERLTIAAAARLAGLDRATTRRCLITLQRLGFATFDGKCYALTARVLTLGHAYLASTPLPEQLQPFLDRLAGTIQESCSCSILDGTHIVYIARAAQRRVMSISLGVGSRLPAYCSSMGRVLLAAMTDEEALALIDRSDLQALTARTLTKREDLATEIARVRREGYCIVDEELEIGLRSLAVPIRSRSGRVVAALNTGVQTSRVGLDRLRAEFLPNLLEVQAQLAAVIA*