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berkeley_reactor_200306_biofilm_scaffold_102636

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Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_102636_1
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(2..784)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003725DD0
ROK family protein
ROK family protein {ECO:0000313|EMBL:ADB53747.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
berkeley_reactor_200306_biofilm_scaffold_102636_2
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

897..2141
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000380C7EF
Amidohydrolase family protein {ECO:0000313|EMBL:EHM03509.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
amidohydrolase
berkeley_reactor_200306_biofilm_scaffold_102636_3
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2361..3497
DNA (1137bp) protein (379aa)
ABC-type sugar transport system periplasmic component-like protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EI16_9RHIZ
ABC-type sugar transport system periplasmic component-like protein {ECO:0000313|EMBL:CCV04037.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
substrate-binding component of ABC transporter
berkeley_reactor_200306_biofilm_scaffold_102636_4
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3596..5086
DNA (1491bp) protein (497aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
Fused D-ribose transporter subunits of ABC superfamily: ATP-binding components n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EIV1_9RHIZ
ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_102636_5
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5099..6079
DNA (981bp) protein (327aa)
monosaccharide-transporting ATPase (EC:3.6.3.17)
D-allose transporter subunit membrane component of ABC superfamily n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EHC6_9RHIZ
D-allose transporter subunit membrane component of ABC superfamily {ECO:0000313|EMBL:CCV04039.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
berkeley_reactor_200306_biofilm_scaffold_102636_6
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6076..7050
DNA (975bp) protein (325aa)
Monosaccharide-transporting ATPase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EID8_9RHIZ
branched-chain amino acid transport system / permease component family protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
berkeley_reactor_200306_biofilm_scaffold_102636_7
bacterium YEK0313, Bacteria

Not on your lists

7089..7877
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Marinobacterium rhizophilum RepID=UPI00036941E6
Diacetyl reductase [(S)-acetoin forming] {ECO:0000313|EMBL:CEJ12744.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_biofilm_scaffold_102636_8
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7913..8680
DNA (768bp) protein (256aa)
Cyclopentanol dehydrogenase {ECO:0000313|EMBL:CCV04041.1}; EC=1.1.1.163 {ECO:0000313|EMBL:CCV04041.1};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
Cyclopentanol dehydrogenase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EWI2_9RHIZ
3-oxoacyl-[acyl-carrier protein] reductase
berkeley_reactor_200306_biofilm_scaffold_102636_9
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8691..9464
DNA (774bp) protein (258aa)
Short-chain dehydrogenase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EIV5_9RHIZ
Short-chain dehydrogenase {ECO:0000313|EMBL:CCV04043.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_102636_10
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9482..10480
DNA (999bp) protein (333aa)
Oxidoreductase-like protein (Modular protein) n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EHD2_9RHIZ
oxidoreductase domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
berkeley_reactor_200306_biofilm_scaffold_102636_11
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10498..11481
DNA (984bp) protein (328aa)
alcohol dehydrogenase (EC:1.1.1.-)
Alcohol dehydrogenase GroES domain protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EIE1_9RHIZ
Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:CCV04045.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
berkeley_reactor_200306_biofilm_scaffold_102636_12
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11502..12395
DNA (894bp) protein (298aa)
BtdhL n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EIU1_9RHIZ
BtdhL {ECO:0000313|EMBL:CCV04028.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
UDP-glucose/GDP-mannose dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_102636_13
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

12406..13479
DNA (1074bp) protein (358aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGX6_SINAD
nucleoside-diphosphate-sugar epimerase
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:AGA28517.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_102636_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13493..14284)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HGZ6_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EHJ95592.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
hutC; histidine utilization repressor
berkeley_reactor_200306_biofilm_scaffold_102636_15
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14429..15964)
DNA (1536bp) protein (512aa)
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
Histidine ammonia-lyase n=1 Tax=Agrobacterium rhizogenes RepID=A8VZT8_AGRRH
Histidine ammonia-lyase
berkeley_reactor_200306_biofilm_scaffold_102636_16
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16246..17169)
DNA (924bp) protein (308aa)
Rcorf12 n=1 Tax=Agrobacterium rhizogenes RepID=A8VZU0_AGRRH
Rcorf12 {ECO:0000313|EMBL:ABW33569.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_102636_17
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17617..18573
DNA (957bp) protein (319aa)
Rcorf13 n=1 Tax=Agrobacterium rhizogenes RepID=A8VZU2_AGRRH
Rcorf13 {ECO:0000313|EMBL:ABW33570.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_102636_18
unknown

Not on your lists

18837..18989
DNA (153bp) protein (51aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_102636_19
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19292..20326
DNA (1035bp) protein (345aa)
Rcorf14 n=1 Tax=Agrobacterium rhizogenes RepID=A8VZU5_AGRRH
Rcorf14 {ECO:0000313|EMBL:ABW33571.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
ABC transporter; substrate-binding component
berkeley_reactor_200306_biofilm_scaffold_102636_20
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20326..21408
DNA (1083bp) protein (361aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
Rcorf15 n=1 Tax=Agrobacterium rhizogenes RepID=A8VZU7_AGRRH
ABC transporter related
berkeley_reactor_200306_biofilm_scaffold_102636_21
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21377..22282
DNA (906bp) protein (302aa)
Rcorf16 n=1 Tax=Agrobacterium rhizogenes RepID=A8VZU9_AGRRH
Rcorf16 {ECO:0000313|EMBL:ABW33573.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_102636_22
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22289..23116
DNA (828bp) protein (276aa)
Rcorf17 n=1 Tax=Agrobacterium rhizogenes RepID=A8VZV2_AGRRH
Rcorf17 {ECO:0000313|EMBL:ABW33574.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_102636_23
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23132..23416)
DNA (285bp) protein (95aa)
YCII-related protein n=1 Tax=uncultured bacterium RepID=K2BC45_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EYS85943.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_102636_24
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23449..24519)
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AD94_9BACT
alcohol dehydrogenase
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
berkeley_reactor_200306_biofilm_scaffold_102636_25
Thioclava dalianensis, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24688..25704
DNA (1017bp) protein (339aa)
beta-hydroxyacid dehydrogenase (EC:1.1.1.-)
BtdhL n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EIU1_9RHIZ
GDP-mannose dehydrogenase {ECO:0000313|EMBL:KEP68878.1}; TaxID=1185766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava dalianensis.;"
berkeley_reactor_200306_biofilm_scaffold_102636_26
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25723..27384)
DNA (1662bp) protein (554aa)
Putative Sugar ABC transporter, periplasmic binding protein (Y4oP) n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EID4_9RHIZ
Putative Sugar ABC transporter, periplasmic binding protein (Y4oP) {ECO:0000313|EMBL:CCV04035.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
putative ABC transporter periplasmatic solute-binding protein
berkeley_reactor_200306_biofilm_scaffold_102636_27
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27392..28324)
DNA (933bp) protein (311aa)
Hydroxyquinol 1,2-dioxygenase {ECO:0000313|EMBL:CDX32889.1}; EC=1.13.11.37 {ECO:0000313|EMBL:CDX32889.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Catechol 1,2-dioxygenase 1 n=1 Tax=Burkholderia sp. SJ98 RepID=K8RGS0_9BURK
6-chlorohydroxyquinol-1,2-dioxygenase
berkeley_reactor_200306_biofilm_scaffold_102636_28
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28409..29470)
DNA (1062bp) protein (354aa)
Maleylacetate reductase {ECO:0000313|EMBL:CDX59903.1}; EC=1.3.1.32 {ECO:0000313|EMBL:CDX59903.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
UPI0003CEB0DF related cluster n=1 Tax=unknown RepID=UPI0003CEB0DF
Maleylacetate reductase
berkeley_reactor_200306_biofilm_scaffold_102636_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29628..30392
DNA (765bp) protein (255aa)
Pca regulon regulatory protein PcaR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2T5_9RHIZ
Pca regulon regulatory protein PcaR {ECO:0000313|EMBL:EYR83641.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pcaR; Transcription activator of the pcaIJF genes,IclR family
berkeley_reactor_200306_biofilm_scaffold_102636_30
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30566..31288
DNA (723bp) protein (241aa)
pcaI; 3-oxoadipate CoA-transferase subunit A (EC:2.8.3.6)
UPI0003CE7450 related cluster n=1 Tax=unknown RepID=UPI0003CE7450
3-oxoadipate CoA-transferase {ECO:0000313|EMBL:KGJ10628.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
Displaying items 1-30 of 44 in total

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