name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_102636_1
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria
|
Not on your lists |
comp(2..784)
|
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003725DD0
ROK family protein
ROK family protein {ECO:0000313|EMBL:ADB53747.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
|
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berkeley_reactor_200306_biofilm_scaffold_102636_2
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
897..2141
|
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000380C7EF
Amidohydrolase family protein {ECO:0000313|EMBL:EHM03509.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
amidohydrolase
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_3
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2361..3497
|
ABC-type sugar transport system periplasmic component-like protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EI16_9RHIZ
ABC-type sugar transport system periplasmic component-like protein {ECO:0000313|EMBL:CCV04037.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
substrate-binding component of ABC transporter
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_4
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3596..5086
|
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
Fused D-ribose transporter subunits of ABC superfamily: ATP-binding components n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EIV1_9RHIZ
ABC transporter ATP-binding protein
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_5
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5099..6079
|
monosaccharide-transporting ATPase (EC:3.6.3.17)
D-allose transporter subunit membrane component of ABC superfamily n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EHC6_9RHIZ
D-allose transporter subunit membrane component of ABC superfamily {ECO:0000313|EMBL:CCV04039.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
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berkeley_reactor_200306_biofilm_scaffold_102636_6
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6076..7050
|
Monosaccharide-transporting ATPase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EID8_9RHIZ
branched-chain amino acid transport system / permease component family protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_7
bacterium YEK0313, Bacteria
|
Not on your lists |
7089..7877
|
hypothetical protein n=1 Tax=Marinobacterium rhizophilum RepID=UPI00036941E6
Diacetyl reductase [(S)-acetoin forming] {ECO:0000313|EMBL:CEJ12744.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
short-chain dehydrogenase/reductase SDR
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_8
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7913..8680
|
Cyclopentanol dehydrogenase {ECO:0000313|EMBL:CCV04041.1}; EC=1.1.1.163 {ECO:0000313|EMBL:CCV04041.1};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
Cyclopentanol dehydrogenase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EWI2_9RHIZ
3-oxoacyl-[acyl-carrier protein] reductase
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_9
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8691..9464
|
Short-chain dehydrogenase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EIV5_9RHIZ
Short-chain dehydrogenase {ECO:0000313|EMBL:CCV04043.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
dehydrogenase
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_10
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9482..10480
|
Oxidoreductase-like protein (Modular protein) n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EHD2_9RHIZ
oxidoreductase domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_11
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10498..11481
|
alcohol dehydrogenase (EC:1.1.1.-)
Alcohol dehydrogenase GroES domain protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EIE1_9RHIZ
Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:CCV04045.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
|
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berkeley_reactor_200306_biofilm_scaffold_102636_12
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11502..12395
|
BtdhL n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EIU1_9RHIZ
BtdhL {ECO:0000313|EMBL:CCV04028.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
UDP-glucose/GDP-mannose dehydrogenase
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_13
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria
|
Not on your lists |
12406..13479
|
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGX6_SINAD
nucleoside-diphosphate-sugar epimerase
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:AGA28517.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
|
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berkeley_reactor_200306_biofilm_scaffold_102636_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13493..14284)
|
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HGZ6_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EHJ95592.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
hutC; histidine utilization repressor
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_15
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14429..15964)
|
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
Histidine ammonia-lyase n=1 Tax=Agrobacterium rhizogenes RepID=A8VZT8_AGRRH
Histidine ammonia-lyase
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_16
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16246..17169)
|
Rcorf12 n=1 Tax=Agrobacterium rhizogenes RepID=A8VZU0_AGRRH
Rcorf12 {ECO:0000313|EMBL:ABW33569.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_17
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17617..18573
|
Rcorf13 n=1 Tax=Agrobacterium rhizogenes RepID=A8VZU2_AGRRH
Rcorf13 {ECO:0000313|EMBL:ABW33570.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_18
unknown
|
Not on your lists |
18837..18989
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_102636_19
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19292..20326
|
Rcorf14 n=1 Tax=Agrobacterium rhizogenes RepID=A8VZU5_AGRRH
Rcorf14 {ECO:0000313|EMBL:ABW33571.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
ABC transporter; substrate-binding component
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_20
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20326..21408
|
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
Rcorf15 n=1 Tax=Agrobacterium rhizogenes RepID=A8VZU7_AGRRH
ABC transporter related
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_21
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21377..22282
|
Rcorf16 n=1 Tax=Agrobacterium rhizogenes RepID=A8VZU9_AGRRH
Rcorf16 {ECO:0000313|EMBL:ABW33573.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
ABC transporter permease
|
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berkeley_reactor_200306_biofilm_scaffold_102636_22
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22289..23116
|
Rcorf17 n=1 Tax=Agrobacterium rhizogenes RepID=A8VZV2_AGRRH
Rcorf17 {ECO:0000313|EMBL:ABW33574.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
ABC transporter
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berkeley_reactor_200306_biofilm_scaffold_102636_23
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23132..23416)
|
YCII-related protein n=1 Tax=uncultured bacterium RepID=K2BC45_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EYS85943.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_24
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23449..24519)
|
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AD94_9BACT
alcohol dehydrogenase
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
|
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berkeley_reactor_200306_biofilm_scaffold_102636_25
Thioclava dalianensis, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24688..25704
|
beta-hydroxyacid dehydrogenase (EC:1.1.1.-)
BtdhL n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EIU1_9RHIZ
GDP-mannose dehydrogenase {ECO:0000313|EMBL:KEP68878.1}; TaxID=1185766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava dalianensis.;"
|
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berkeley_reactor_200306_biofilm_scaffold_102636_26
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25723..27384)
|
Putative Sugar ABC transporter, periplasmic binding protein (Y4oP) n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EID4_9RHIZ
Putative Sugar ABC transporter, periplasmic binding protein (Y4oP) {ECO:0000313|EMBL:CCV04035.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
putative ABC transporter periplasmatic solute-binding protein
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_27
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27392..28324)
|
Hydroxyquinol 1,2-dioxygenase {ECO:0000313|EMBL:CDX32889.1}; EC=1.13.11.37 {ECO:0000313|EMBL:CDX32889.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Catechol 1,2-dioxygenase 1 n=1 Tax=Burkholderia sp. SJ98 RepID=K8RGS0_9BURK
6-chlorohydroxyquinol-1,2-dioxygenase
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_28
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28409..29470)
|
Maleylacetate reductase {ECO:0000313|EMBL:CDX59903.1}; EC=1.3.1.32 {ECO:0000313|EMBL:CDX59903.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
UPI0003CEB0DF related cluster n=1 Tax=unknown RepID=UPI0003CEB0DF
Maleylacetate reductase
|
|
berkeley_reactor_200306_biofilm_scaffold_102636_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
29628..30392
|
Pca regulon regulatory protein PcaR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2T5_9RHIZ
Pca regulon regulatory protein PcaR {ECO:0000313|EMBL:EYR83641.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pcaR; Transcription activator of the pcaIJF genes,IclR family
|
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berkeley_reactor_200306_biofilm_scaffold_102636_30
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
30566..31288
|
pcaI; 3-oxoadipate CoA-transferase subunit A (EC:2.8.3.6)
UPI0003CE7450 related cluster n=1 Tax=unknown RepID=UPI0003CE7450
3-oxoadipate CoA-transferase {ECO:0000313|EMBL:KGJ10628.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
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