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berkeley_reactor_200306_biofilm_scaffold_102636_21

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 21377..22282

Top 3 Functional Annotations

Value Algorithm Source
Rcorf16 n=1 Tax=Agrobacterium rhizogenes RepID=A8VZU9_AGRRH similarity UNIREF
DB: UNIREF100
  • Identity: 79.7
  • Coverage: 301.0
  • Bit_score: 468
  • Evalue 2.90e-129
Rcorf16 {ECO:0000313|EMBL:ABW33573.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.7
  • Coverage: 301.0
  • Bit_score: 468
  • Evalue 4.10e-129
ABC transporter permease similarity KEGG
DB: KEGG
  • Identity: 40.7
  • Coverage: 275.0
  • Bit_score: 195
  • Evalue 1.30e-47

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Taxonomy

Agrobacterium rhizogenes → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 906
ATGTCGCGAGCGCCGTCATTGCCCAGGACTGACGGCCCCGGCGACGGCGCCCTGGCGAGGGCCGGCGGACTGATCGCCCGCGGCTCGCTCTTCCTGCCGTTCGCCTTCGTCGCCCTGTTCTTCTTCGTGCCCATGGGCTGGCTGATCGCCACCAGCCTGTCGTCGCACGAGCTCGGCAGCGCTCCCCGGTTCACCGGCACGCTGGAGCACTATGCCCGGTTCTGGACCGATCCGTTCTATCTGGAGACGGCGCTGTGGACCACGATCAAGCTGTCCGTCCTGTCGACGGTCTTCGCCCTGATCATCGGCTATGTCCTGGCCTATTACATCGCCGGGCTGCCGTCCAATCGCCGCGGCCTGCTCACCAGCCTGGTGGTCGTCTCGCTGTCGGTCAACATCGTCATCCGCATCTTCGGCCTCAACGTGCTCCTGATGAACGGCGGCCTGGTCACCGGCGCGCTCGGCCTGATCGGGCTCGGGCCGATGCGGATCATGTATACCGAGCTCGGCGTGCTGATCGGGCTCGTCCAGATCGCCGTGCCCTATGTCGTGCTGCCGCTGATCGGCGTGCTCGCCGCCATCGATCCGGCGCTGAAGGAGGCCGCCGCGAGTGTCGGGGCGGGCCGGCAGCGGACCTTCTGGGCCGTGACCTTTCCGCTGTCGCTGCCCGGCGTCGTCGCCGGCACGCTGATCGCGTTCACCCTCAATGCGGCGGCCTTCGCCATCCCCTCGCTGATGGGGGGCGGACGGGTGAGGATGATGGGCATGATGGCCTACGAGCAGGCCACGATCCAGGGCAACTTCCCCTTCGCCGCCGCGATCGGCATCAGCCTGACGGTGCTCAGCATCGTCGTGACGGCCATCTATCTCGTCGCCGTTCGTCGCATCTTCCGGACATCGAGGTAA
PROTEIN sequence
Length: 302
MSRAPSLPRTDGPGDGALARAGGLIARGSLFLPFAFVALFFFVPMGWLIATSLSSHELGSAPRFTGTLEHYARFWTDPFYLETALWTTIKLSVLSTVFALIIGYVLAYYIAGLPSNRRGLLTSLVVVSLSVNIVIRIFGLNVLLMNGGLVTGALGLIGLGPMRIMYTELGVLIGLVQIAVPYVVLPLIGVLAAIDPALKEAAASVGAGRQRTFWAVTFPLSLPGVVAGTLIAFTLNAAAFAIPSLMGGGRVRMMGMMAYEQATIQGNFPFAAAIGISLTVLSIVVTAIYLVAVRRIFRTSR*