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berkeley_reactor_200306_biofilm_scaffold_102636_15

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(14429..15964)

Top 3 Functional Annotations

Value Algorithm Source
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.3
  • Coverage: 509.0
  • Bit_score: 820
  • Evalue 1.20e-234
Histidine ammonia-lyase n=1 Tax=Agrobacterium rhizogenes RepID=A8VZT8_AGRRH similarity UNIREF
DB: UNIREF100
  • Identity: 81.3
  • Coverage: 509.0
  • Bit_score: 820
  • Evalue 8.70e-235
Histidine ammonia-lyase similarity KEGG
DB: KEGG
  • Identity: 72.0
  • Coverage: 511.0
  • Bit_score: 719
  • Evalue 3.50e-205

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Taxonomy

Agrobacterium rhizogenes → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1536
ATGGCCAACGTGCTCGTTCCCGGTGATGTCTCGCTCGACACGCTCCAGGCGGTCTATGAAACCGGGATCGTCCCGCGTCTCGATCCCGCCTGCTTGCCGCGCGTGCGGGCATCGTCCGAGCGGATATCGGACATTCTCGGGGGCAGCGAGGCCCACTACGGCATCAACACCGGCTTCGGCAAGCTCGCCAGCGTGCGGATCCCCACGGAAGATGTGGACAGGCTGCAGCGCAACCTCATCCTCTCCCATTGCTGCGGCGTCGGCGCGCCGCTGCCGGACGCGGTCGTGCGCCTGATCATGACGCTGAAGCTGATCTCGCTCGGGCGCGGAGCATCCGGCGTGCGGCCCGAGGTCGTGCAGGCGCTCGCCGCCATGCTCGAAAGCGGCGTCCTGCCGATCATCCCGGAAAAGGGATCCGTGGGCGCATCCGGCGACCTGGCGCCGCTGGCGCACATGACCGCGGCCCTGATCGGGGAAGGCATGGTCAGGGTCGACGGCGATCTCGTCCCGGCGCGCCAGGGCCTGGCGAAGGCAGGCCTGTCGCCGATCGCCCTGAAGGCCAAGGAGGGGCTGGCCATGATCAACGGCACCCAGACCTCCACCGCCTTGGCCCTGGCGGGCCTTTTCAGGGCGCACCGGGCGCTGGTGTCGTCGTTGATCTCGGGTGCGCTCTCGACCGACGCCGCGATGGGCTCGACCTCGCCCTTCCATCCCGAGATCCACGGCCTGCGCGGACATCGCGGCCAGATCGACGCCGCGTCCGCCCTGAGCCTGCTGATGCAGGGATCCGAGATCCGCGCCAGCCACCAACTGGGCGACGAGCGGGTGCAGGACCCCTATTGCCTGCGCTGCCAGCCGCAGGTGGTCGGCGCCTGCCTCGACCTCCTGCGCCAGACGGCCCAGACCCTCAAGATGGAAGCCAACGCGGCCACCGACAACCCGCTGGTGCTCTCCGATGGCACGATCGTGTCCGGCGGAAACTTCCACGCCGAGCCCGTCGCCTTTGCCGCGGACCAGATCGCGATCGCGGTCTGCGAGATCGGCTCCATCGCGCAGCGGCGCATCGCGCTGCTGGTCGATCCGGTCCTGAGCTACGGCCTGCCCGCCTTCCTCACGCCGAGGCCCGGCCTGAATTCCGGGTTCATGATCGCCGAGGTCACTTCCGCGGCCCTGATGTCCGAGAACAAGCAGATGTCGCATCCGGCTTCGGTCGATTCGACGCCCACCTCCGCCAACCAGGAGGACCACGTGTCCATGGCATGCCACGGCGCGCGGCGGCTGCTGGCGATGACCGAGAACCTGTTCTCGATCATCGGCATCGAAACCTTGACCGCGGCCCAGGGCATCGACCTCAGGCGACCGCTCGCCTCGAGCCCGGAGCTGAACGCAGTCCGCAAAATCGTGCGCAGCGTCGTGCCGGAGCTGGCGGACGATCGCTACATGGCCGAGGACCTGCGCCTGGCTGCCGACCTGGTTTCAACCGGGCACCTGGCGCGGGCCGTGAGCGCCGGCATTCTTCCCGTCCTGGACAGCTGA
PROTEIN sequence
Length: 512
MANVLVPGDVSLDTLQAVYETGIVPRLDPACLPRVRASSERISDILGGSEAHYGINTGFGKLASVRIPTEDVDRLQRNLILSHCCGVGAPLPDAVVRLIMTLKLISLGRGASGVRPEVVQALAAMLESGVLPIIPEKGSVGASGDLAPLAHMTAALIGEGMVRVDGDLVPARQGLAKAGLSPIALKAKEGLAMINGTQTSTALALAGLFRAHRALVSSLISGALSTDAAMGSTSPFHPEIHGLRGHRGQIDAASALSLLMQGSEIRASHQLGDERVQDPYCLRCQPQVVGACLDLLRQTAQTLKMEANAATDNPLVLSDGTIVSGGNFHAEPVAFAADQIAIAVCEIGSIAQRRIALLVDPVLSYGLPAFLTPRPGLNSGFMIAEVTSAALMSENKQMSHPASVDSTPTSANQEDHVSMACHGARRLLAMTENLFSIIGIETLTAAQGIDLRRPLASSPELNAVRKIVRSVVPELADDRYMAEDLRLAADLVSTGHLARAVSAGILPVLDS*