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berkeley_reactor_200306_biofilm_scaffold_131415_1

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(1..393)

Top 3 Functional Annotations

Value Algorithm Source
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13) similarity KEGG
DB: KEGG
  • Identity: 81.2
  • Coverage: 128.0
  • Bit_score: 220
  • Evalue 1.70e-55
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:ABQ70363.1}; EC=5.1.3.13 {ECO:0000313|EMBL:ABQ70363.1};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.2
  • Coverage: 128.0
  • Bit_score: 220
  • Evalue 8.40e-55
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VDJ7_SPHWW similarity UNIREF
DB: UNIREF100
  • Identity: 81.2
  • Coverage: 128.0
  • Bit_score: 220
  • Evalue 6.00e-55

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Taxonomy

Sphingomonas wittichii → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 393
ATGACGACACCGGTGAAGCTGATCAGGACGAAGCGTTTCGGGGACGACCGGGGTTGGTTCTCGGAGACCTACAGCGAGGCCAAGCTGACCGGGCTCGGGATCACGGATCGCTTCGTGCAGGACAACCAGTCCTTCTCCAAGTTCGCCGGAACGATCCGGGGCATCCATTTCCAGCGCCCGCCGCATGCGCAGGCCAAGCTGGTGCGCTGCGTGCGGGGGCGGATCCTGGACTATGCGGTGGACCTCAGGCGGGGCTCGCCGACCTATGGGCGGCATGTAGCGGCGGAGCTGAGCGCGGAGAATGGCGACCAGCTCTACGTGCCGGTCGGCTTCGGCCATGCCTTCGTCACGCTCGAGCCGGACGTGGAGGTGGCCTACAAGGTCTCGGACGTC
PROTEIN sequence
Length: 131
MTTPVKLIRTKRFGDDRGWFSETYSEAKLTGLGITDRFVQDNQSFSKFAGTIRGIHFQRPPHAQAKLVRCVRGRILDYAVDLRRGSPTYGRHVAAELSAENGDQLYVPVGFGHAFVTLEPDVEVAYKVSDV