name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_131415_1
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1..393)
|
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:ABQ70363.1}; EC=5.1.3.13 {ECO:0000313|EMBL:ABQ70363.1};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VDJ7_SPHWW
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_2
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(484..1263)
|
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UCA0_SINMW
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABR61280.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_3
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1241..1768)
|
Cupin 2, conserved barrel n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11DK1_MESSB
cupin
Cupin 2, conserved barrel {ECO:0000313|EMBL:ABG64524.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_4
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1939..2214
|
UPI0003CF8A60 related cluster n=1 Tax=unknown RepID=UPI0003CF8A60
AbrB family transcriptional regulator {ECO:0000313|EMBL:ESY98501.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
AbrB family transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2201..2590
|
PilT protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J9Y4_AGRRK
PilT protein
PilT protein {ECO:0000313|EMBL:ACM25602.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
|
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berkeley_reactor_200306_biofilm_scaffold_131415_6
Streptomyces sp. SirexAA-E, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria
|
Not on your lists |
2781..4319
|
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=862751 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. (strain SirexAA-E / ActE).;"
ABC transporter related protein n=1 Tax=Streptomyces sp. SirexAA-E RepID=G2NKR1_9ACTO
ABC transporter-like protein
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_7
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4340..5314
|
sugar transporter n=1 Tax=Ruegeria conchae RepID=UPI0002378D73
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component {ECO:0000313|EMBL:EDQ34922.2}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
sugar ABC transporter
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_8
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5345..6343
|
Sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D042_9RHIZ
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:EDQ34921.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
sugar ABC transporter substrate-binding protein
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_9
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6404..7189
|
YvrD n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D053_9RHIZ
Dehydrogenase with different specificity {ECO:0000313|EMBL:EDQ34928.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
YvrD-like short-chain dehydrogenase/reductase
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_10
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7386..8267
|
putative nad-dependent epimerase/dehydratase; oxidoreductase protein (EC:1.-.-.-)
Putative nad-dependent epimerase/dehydratase oxidoreductase protein n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8NFE0_RALSL
Uncharacterized protein {ECO:0000313|EMBL:KFG69840.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_11
Bacillus thermotolerans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria
|
Not on your lists |
8486..9784
|
aminotransferase n=1 Tax=Bacillus fordii RepID=UPI000377B679
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000313|EMBL:KKB38844.1}; TaxID=1221996 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus thermotolerans.;"
aminotransferase
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_12
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9792..11063)
|
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UBE7_METS4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA16543.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_13
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11704..12924)
|
Polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4X5Z9_9BURK
Polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family {ECO:0000313|EMBL:EFF77782.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
capsule polysaccharide export inner-membrane protein
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_14
Burkholderia sp. RPE64, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12878..13588)
|
ATPase component of an ABC polysaccharide exporter n=1 Tax=Burkholderia sp. RPE64 RepID=R4WK88_9BURK
ATPase component of an ABC polysaccharide exporter
ATPase component of an ABC polysaccharide exporter {ECO:0000313|EMBL:BAN24844.1}; TaxID=758793 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE64.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_15
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13923..16058)
|
Capsule polysaccharide export protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HUM6_9RHIZ
Capsule polysaccharide export protein {ECO:0000313|EMBL:EJN06068.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
capsule polysaccharide modification protein
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_16
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16685..18865
|
Glycosyl transferase, group 1 n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2YVW7_9CAUL
Glycosyl transferase, group 1 {ECO:0000313|EMBL:GAD59631.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_17
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18931..20439
|
acetylglucosamine transferase n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003623E40
Putative O-linked N-acetylglucosamine transferase, SPINDLY family {ECO:0000313|EMBL:EIG62670.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_18
Enterobacteria phage P1, Punalikevirus, Caudovirales, Viruses
|
Not on your lists |
20515..21576
|
Putative uncharacterized protein n=1 Tax=Escherichia coli B093 RepID=H1DUR9_ECOLX
Glt {ECO:0000313|EMBL:AAQ07543.1}; TaxID=10682 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae; Punalikevirus.;" source="Enterobacteria phage P7 (Bacteriophage P7).;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_19
uncultured planctomycete, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria
|
Not on your lists |
21573..22400
|
Hypothetical conserved protein n=1 Tax=uncultured planctomycete RepID=H5SAT3_9BACT
Hypothetical conserved protein {ECO:0000313|EMBL:BAL53269.1}; TaxID=120965 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; environmental samples.;" source="uncultured planctomycete.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_20
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22548..23723
|
Carbohydrate export ABC transporter transmembrane component n=1 Tax=Achromobacter xylosoxidans C54 RepID=E5U6Z0_ALCXX
sugar ABC transporter permease
Polysialic acid transport protein kpsM {ECO:0000313|EMBL:CKH39789.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_21
unknown
|
Not on your lists |
comp(23902..25290)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_131415_22
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25606..27669)
|
Glycosyltransferase, group 1 family protein {ECO:0000313|EMBL:KCB43598.1}; EC=2.4.-.- {ECO:0000313|EMBL:KCB43598.1};; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
Capsular polysaccharide biosynthesis protein n=1 Tax=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) RepID=Q7W6F3_BORPA
wbpT; capsular polysaccharide biosynthesis protein
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_23
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28041..29318)
|
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:KDD53124.1}; EC=2.4.-.- {ECO:0000313|EMBL:KDD53124.1};; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
Putative glycosyl transferase n=2 Tax=Bordetella RepID=K0MF24_BORPB
glycosyl transferase
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_24
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(29409..30692)
|
UDP-N-acetyl-D-galactosamine dehydrogenase n=1 Tax=Afipia birgiae RepID=UPI0002D33FD4
GDP-mannose dehydrogenase {ECO:0000313|EMBL:KKC34569.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
GDP-mannose dehydrogenase
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_25
Lyngbya aestuarii, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria
|
Not on your lists |
comp(31249..31878)
|
Methyltransferase domain protein n=1 Tax=Lyngbya aestuarii BL J RepID=U7QBX5_9CYAN
Methyltransferase domain protein {ECO:0000313|EMBL:ERT04236.1}; TaxID=1348334 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya aestuarii BL J.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_26
unknown
|
Not on your lists |
comp(32376..33035)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_131415_27
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
33458..35572
|
Glycosyltransferase, group 1 family protein {ECO:0000313|EMBL:KCV60937.1}; EC=2.4.-.- {ECO:0000313|EMBL:KCV60937.1};; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
Capsular polysaccharide biosynthesis protein n=2 Tax=Bordetella bronchiseptica RepID=K0MW06_BORBM
wbpT; capsular polysaccharide biosynthesis protein
|
|
berkeley_reactor_200306_biofilm_scaffold_131415_28
unknown
|
Not on your lists |
35745..35942
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_131415_29
Leptospirillum ferriphilum, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria
|
Not on your lists |
36660..37625
|
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XYY5_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIA31694.1}; TaxID=1441628 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum ferriphilum YSK.;"
|
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berkeley_reactor_200306_biofilm_scaffold_131415_30
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(37758..39704)
|
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XYY5_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG91973.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
|