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berkeley_reactor_200306_biofilm_scaffold_131415_5

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 2201..2590

Top 3 Functional Annotations

Value Algorithm Source
PilT protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J9Y4_AGRRK similarity UNIREF
DB: UNIREF100
  • Identity: 68.2
  • Coverage: 129.0
  • Bit_score: 188
  • Evalue 3.20e-45
PilT protein similarity KEGG
DB: KEGG
  • Identity: 68.2
  • Coverage: 129.0
  • Bit_score: 188
  • Evalue 9.20e-46
PilT protein {ECO:0000313|EMBL:ACM25602.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.2
  • Coverage: 129.0
  • Bit_score: 188
  • Evalue 4.60e-45

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Taxonomy

Agrobacterium tumefaciens → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 390
ATGCTCGCGATTGATACCAACGTCATCGTCCGGTATCTCACCGGTGATCATCCGGACCAGTCCCGCCGCGCCCGTGCCCTGATCGACGGACAGCCTGTCTTCGCCGCCGTCACGGTCATTCTGGAGACCGAATGGGTGCTGCGCAGCGTCTATGGCCATCGTTCGGCGGATATCGCCCGCACCCTGAAGGCCTTTGCGGGGCTGCCCACGGTGACGGTGGCGAGCGAAACGATCGTTGCGGTGGCGCTCGATCTCGCCGAGCGGGGGATGGACTTCGCCGACGCCCTGCATCTCGGTCAGGCCCAGCATTGCGAAGGCTTTGCCACGTTCGACGCCCGGCTCGTCAAGGCGGCTGCGACCGCCGGTCACGAGACCGTGCGACTGGCCTGA
PROTEIN sequence
Length: 130
MLAIDTNVIVRYLTGDHPDQSRRARALIDGQPVFAAVTVILETEWVLRSVYGHRSADIARTLKAFAGLPTVTVASETIVAVALDLAERGMDFADALHLGQAQHCEGFATFDARLVKAAATAGHETVRLA*