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berkeley_reactor_200306_biofilm_scaffold_131489_4

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 3205..4011

Top 3 Functional Annotations

Value Algorithm Source
Linocin_M18 bacteriocin protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JHD1_AGRRK similarity UNIREF
DB: UNIREF100
  • Identity: 82.1
  • Coverage: 268.0
  • Bit_score: 444
  • Evalue 4.00e-122
Linocin_M18 bacteriocin protein similarity KEGG
DB: KEGG
  • Identity: 82.1
  • Coverage: 268.0
  • Bit_score: 444
  • Evalue 1.10e-122
Bacteriocin {ECO:0000313|EMBL:KEA08334.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.1
  • Coverage: 268.0
  • Bit_score: 444
  • Evalue 5.60e-122

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Taxonomy

Agrobacterium rhizogenes → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 807
ATGAATAATCTTTATCGGGAGCTGGCCCCGATCTCCGACAGCGCCTGGGCTGAGATCGAGGACGAGGCGTCCCGGACGCTCAAGCGTCACCTGGCGGCGCGGCGTGTCGTTGATGTCGTCGGCCCGAAGGGCTTCGACTTCGCGGCCGTGGGGACCGGTCATCTCAGGCCGATCGCCGCACCCGGCGACGGCGTCCAGACCGCGCAGCGCGAGGTCAAGGCGCTGGTCGAGCTGCGCGTTCCCTTCGAGCTCGCCCGCCAGGCGATCGACGACGTGGAGCGCGGCGCCACGGATTCGGACTGGTCGCCGGTCAAGGAAGCGGCCCGGAAGATCGCCTTCGCGGAAGATCGCTCCGTTTTCGAGGGATATGCGGCAGCGGGGATCCAGGGCATACGCGAGGGCAGCAGCAACCCGGCGCTGACGCTGCCCGCCGATGCGGTCGGCTATCCCGGCGCGGTCGCCCAGGCGGTGAGCCAGCTGCGCCTGGCCGGCGTCAACGGCCCCTACGCGCTCGTGCTGGGCGCAAAGGCCTATGCCGCCGCCAGCGGCGGCAGCGACGACGGCTACCCGGTCTTCCACCATCTCGAACGCGTGGTGGACGGCGGGATCGTCTGGGCGCCGGCCATCGAAGGCGCCTTCGTGCTCACCACCCGCAGCGGCGATTTCGAGCTGACCATCGGCCAGGATCTCTCCATCGGCTATCTCAGCCATTCCAGCACGAGCGTCGAGCTCTATCTGCAGGAATCCTTCACCTTCCGGCTGTTGACCACCGAGGCGGTCGTCGCGCTCGCGCCAGCGAAGGCGTGA
PROTEIN sequence
Length: 269
MNNLYRELAPISDSAWAEIEDEASRTLKRHLAARRVVDVVGPKGFDFAAVGTGHLRPIAAPGDGVQTAQREVKALVELRVPFELARQAIDDVERGATDSDWSPVKEAARKIAFAEDRSVFEGYAAAGIQGIREGSSNPALTLPADAVGYPGAVAQAVSQLRLAGVNGPYALVLGAKAYAAASGGSDDGYPVFHHLERVVDGGIVWAPAIEGAFVLTTRSGDFELTIGQDLSIGYLSHSSTSVELYLQESFTFRLLTTEAVVALAPAKA*