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berkeley_reactor_200306_biofilm_scaffold_140837_22

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(22828..24060)

Top 3 Functional Annotations

Value Algorithm Source
ROK family transcriptional regulator n=1 Tax=Rhizobium phaseoli RepID=UPI000301C537 similarity UNIREF
DB: UNIREF100
  • Identity: 37.3
  • Coverage: 391.0
  • Bit_score: 228
  • Evalue 6.90e-57
ROK family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 37.4
  • Coverage: 396.0
  • Bit_score: 226
  • Evalue 9.70e-57
Probable transcriptional regulator protein, ROK family {ECO:0000313|EMBL:ACE92563.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 37.4
  • Coverage: 396.0
  • Bit_score: 226
  • Evalue 4.80e-56

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Taxonomy

Rhizobium etli → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1233
GTGAAAGACCCAGGCCTCGGGAAGAACCACGGCTTCACCAAGCGGCTGAACCGGCAGACGGTGCTCGGCCTGCTCAGGCGCGACCCCTCGCTCAGCCGCGCCGAGATCGCGCGCCTGGTGCAGCTCAGCCCGCAGGCCGTCTCCAACATCACCCAGGACCTGTGGGATGGCGGGCTGGTGGTGCCCGCCGGCAAGGTCTATGGCGGCAAGGGCCAGCCGCCGACGAGCTATCGCATCGCCGCCGATTGCGGCTTCGGCATCGGGCTGCACCTCGACCGCACCGCGGTGCGCGCCGTGCTGATCGATTTCGCCTATGCCGAGCGGGCGCAGATCCGCGAGCCGCTGACGGACCCGTCGGAAGCCGGGGTGCGCGGCACGCTGCGTCGTCTCGTCGACGGGCTCATCGCCGCCGCCGGCGTCGAGCGCCGGCGCGTCTGGGGCGTCGGCATCGCCTCACCCCGCCTGCGCCTCGATGGCGAGGAGCTCGACAGCCCGCTGCTGGAAGGCGAGTTCTGGAGCAGGGTGCACGGCTACGAGCTCGACCGCGGCCTGGCCGAGGACACGGGCCTTGCCGTCATCGTCGAGAACGACGCGAATGCCGGCGCCCTCGGCGAGCTCACCTTCGGCCGCGGCGTCGGCCTGCAGCATTTCTGCTACCTCTTCCTCGGCCACGGCCTCGGCGGCGGCCTGGTGCAGAACGGGGCGATCTACCGCGGCGGCTCGGCCAATGCCGGCGAGGTCGGCCGCATCCTGGTGCGGCGGGGCGAGGAGACGCTCTACCTGGAATCGATCCTGTCGCTCGAAGGCCTGCTCGGCCGGATCGCGCCGGGCGAGGATGCGATCCACGACCTCGACCTCAGCCTGCCCGACCTGATCGATGGCGCCCGCGCGGCGACCGAGGCCTGGATCGAGGCGGCGGCAGACCATCTGCGCTGGCTGGTCGCCACGCTGGAGAACACGCTCGACCCGCAGACGATCCTGATCGGCAGCGACCTGCCGCCGCATGTGCTGGACCGCCTGGTCGAGCGCGCCCACCCGCTGCATCCCACCATCGGCCTGCGCCGCGACCGCGCCATCCCCCGCCTGCAGGCCGGCCTGATCGGCACCGACGTGATCGCGCTCGGCGCCGCCACGACCCCCCTGCTGGCGACGCTCGACCCGGACCCGGCCGCGACCTGGACCATCCGCGGCCGCATCCTCGACCTCTACGAGCCGGCCGGTCCGGGGGCCTGA
PROTEIN sequence
Length: 411
VKDPGLGKNHGFTKRLNRQTVLGLLRRDPSLSRAEIARLVQLSPQAVSNITQDLWDGGLVVPAGKVYGGKGQPPTSYRIAADCGFGIGLHLDRTAVRAVLIDFAYAERAQIREPLTDPSEAGVRGTLRRLVDGLIAAAGVERRRVWGVGIASPRLRLDGEELDSPLLEGEFWSRVHGYELDRGLAEDTGLAVIVENDANAGALGELTFGRGVGLQHFCYLFLGHGLGGGLVQNGAIYRGGSANAGEVGRILVRRGEETLYLESILSLEGLLGRIAPGEDAIHDLDLSLPDLIDGARAATEAWIEAAADHLRWLVATLENTLDPQTILIGSDLPPHVLDRLVERAHPLHPTIGLRRDRAIPRLQAGLIGTDVIALGAATTPLLATLDPDPAATWTIRGRILDLYEPAGPGA*