ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_140837

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_140837_1
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

269..2458
DNA (2190bp) protein (730aa)
Ferrichrome outer membrane transporter n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FBS8_9RHIZ
Ferrichrome outer membrane transporter {ECO:0000313|EMBL:CCV13870.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
TonB-dependent siderophore receptor
berkeley_reactor_200306_biofilm_scaffold_140837_2
bacterium YEK0313, Bacteria

Not on your lists

2461..3297
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EC47B3
Iron(3+)-hydroxamate import ATP-binding protein FhuC {ECO:0000313|EMBL:CEJ14835.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Fe+3 siderophore/cobalamin ABC transporter ATPase subunit
berkeley_reactor_200306_biofilm_scaffold_140837_3
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3376..4248)
DNA (873bp) protein (291aa)
short chain dehydrogenase/reductase family oxidoreductase (EC:1.1.1.100)
Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0ABW6_COLFT
DltE protein {ECO:0000313|EMBL:BAQ47218.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
berkeley_reactor_200306_biofilm_scaffold_140837_4
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4313..4927
DNA (615bp) protein (205aa)
Transcriptional regulator n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P4L9_AZOS1
TetR family transcriptional regulator {ECO:0000313|EMBL:KJR61585.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_140837_5
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4999..5805)
DNA (807bp) protein (269aa)
3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Pseudomonas fluorescens F113 RepID=G8Q8B3_PSEFL
Oxidoreductase/SDR, 3-oxoacyl-(Acyl carrier protein) reductase {ECO:0000313|EMBL:GAN79228.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
3-oxoacyl-ACP reductase
berkeley_reactor_200306_biofilm_scaffold_140837_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5802..6743)
DNA (942bp) protein (314aa)
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:CDX14962.1}; EC=1.1.1.35 {ECO:0000313|EMBL:CDX14962.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RSH0_9PROT
berkeley_reactor_200306_biofilm_scaffold_140837_7
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6746..7633)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z8J9_9RHOB
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:CDX42089.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
putative beta-lactamase domain protein
berkeley_reactor_200306_biofilm_scaffold_140837_8
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7664..8203)
DNA (540bp) protein (180aa)
Uncharacterized protein {ECO:0000313|EMBL:CDX14967.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
berkeley_reactor_200306_biofilm_scaffold_140837_9
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8200..9234)
DNA (1035bp) protein (345aa)
Transcriptional regulator, LacI family n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z7G2_9RHOB
LacI family transcriptional regulator {ECO:0000313|EMBL:CDX14969.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
LacI family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_140837_10
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9289..10578)
DNA (1290bp) protein (430aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase id=4253863 bin=GWF2_Methylomirabilis_70_14 species=Starkeya novella genus=Starkeya taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
berkeley_reactor_200306_biofilm_scaffold_140837_11
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10634..11854)
DNA (1221bp) protein (407aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00035E791F
Monosaccharide ABC transporter substrate-binding protein, CUT2 family {ECO:0000313|EMBL:CDX42101.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
periplasmic binding domain protein
berkeley_reactor_200306_biofilm_scaffold_140837_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11938..12999)
DNA (1062bp) protein (354aa)
Ribose ABC transport system, permease protein RbsC n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z8J4_9RHOB
Monosaccharide ABC transporter membrane protein, CUT2 family {ECO:0000313|EMBL:CDX14976.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
sugar ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_140837_13
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12996..14003)
DNA (1008bp) protein (336aa)
Ribose ABC transport system, permease protein RbsC n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2YPP9_9RHOB
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter {ECO:0000313|EMBL:CDX14978.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
branched-chain amino acid transport system / permease component family protein
berkeley_reactor_200306_biofilm_scaffold_140837_14
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14000..15526)
DNA (1527bp) protein (509aa)
Ribose import ATP-binding protein RbsA 2 {ECO:0000313|EMBL:CDX14980.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CDX14980.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Ribose ABC transport system, ATP-binding protein RbsA n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z7F7_9RHOB
sugar ABC transporter ATPase subunit
berkeley_reactor_200306_biofilm_scaffold_140837_15
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15775..17052
DNA (1278bp) protein (426aa)
Sugar ABC transporter periplasmic protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES06_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM34130.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
thuE; ABC transporter sugar-binding protein
berkeley_reactor_200306_biofilm_scaffold_140837_16
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17114..17986
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003658E86
AP endonuclease {ECO:0000313|EMBL:KFL32680.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative sugar phosphate isomerase/epimerase IoIE
berkeley_reactor_200306_biofilm_scaffold_140837_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17983..18786
DNA (804bp) protein (268aa)
PREDICTED: glucosamine-6-phosphate isomerase-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C105DF
6-phosphogluconolactonase/glucosamine-6-phosphate isomerase/deaminase {ECO:0000313|EMBL:EYR78280.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_140837_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18786..19703
DNA (918bp) protein (306aa)
ROK family protein n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CH19_THET1
Transcriptional regulator/sugar kinase {ECO:0000313|EMBL:EYR78281.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative glucokinase
berkeley_reactor_200306_biofilm_scaffold_140837_19
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19685..20788
DNA (1104bp) protein (368aa)
ABC-type sugar transport systems, ATPase component n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IPT7_RHIML
ABC-type sugar transport systems, ATPase component
Putative sugar uptake ABC transporter ATP-binding protein {ECO:0000313|EMBL:CAC49686.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
berkeley_reactor_200306_biofilm_scaffold_140837_20
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20785..21675
DNA (891bp) protein (297aa)
ABC transporter permease n=1 Tax=Rhizobium mongolense RepID=UPI0003B56895
ABC transporter permease {ECO:0000313|EMBL:KGM34129.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ABC transporter permease protein
berkeley_reactor_200306_biofilm_scaffold_140837_21
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21680..22561
DNA (882bp) protein (294aa)
PREDICTED: probable sulfate transport system permease protein cysT-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1244D
Sugar ABC transporter permease {ECO:0000313|EMBL:KGM34128.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
sugar ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_140837_22
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22828..24060)
DNA (1233bp) protein (411aa)
ROK family transcriptional regulator n=1 Tax=Rhizobium phaseoli RepID=UPI000301C537
ROK family transcriptional regulator
Probable transcriptional regulator protein, ROK family {ECO:0000313|EMBL:ACE92563.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
berkeley_reactor_200306_biofilm_scaffold_140837_23
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24157..25221
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037E7CAB
Myo-inositol 2-dehydrogenase {ECO:0000313|EMBL:KFL32679.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Oxidoreductase, N-terminal domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_140837_24
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25343..26161
DNA (819bp) protein (273aa)
Probable L-aspartate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01265}; EC=1.4.1.21 {ECO:0000256|HAMAP-Rule:MF_01265};; Flags: Precursor;; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
Probable L-aspartate dehydrogenase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B0V8_PARDP
aspartate dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_140837_25
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26161..27930
DNA (1770bp) protein (590aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003620994
Putative Methylmalonyl-CoA mutase domain-containing protein {ECO:0000313|EMBL:CDX13292.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_140837_26
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27927..29561
DNA (1635bp) protein (545aa)
FAD binding domain protein {ECO:0000313|EMBL:CDX56502.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Possible 3-oxosteroid 1-dehydrogenase id=2429414 bin=GWF1_Rhodobacteraceae_65_7 species=Roseomonas cervicalis genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Dehydrogenase flavoprotein
berkeley_reactor_200306_biofilm_scaffold_140837_27
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29666..29968
DNA (303bp) protein (101aa)
UPI0003CF8552 related cluster n=1 Tax=unknown RepID=UPI0003CF8552
Uncharacterized protein {ECO:0000313|EMBL:ESW81517.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_140837_28
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30021..30932)
DNA (912bp) protein (304aa)
Arginase/agmatinase/formiminoglutamase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TNG8_MESCW
arginase/agmatinase/formiminoglutamase
Arginase/agmatinase/formiminoglutamase {ECO:0000313|EMBL:ADV12850.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
berkeley_reactor_200306_biofilm_scaffold_140837_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30955..32577)
DNA (1623bp) protein (541aa)
ABC transporter related n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7II24_XANP2
ABC transporter related protein {ECO:0000313|EMBL:KFC72814.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter-like protein
berkeley_reactor_200306_biofilm_scaffold_140837_30
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32642..33934)
DNA (1293bp) protein (431aa)
FAD dependent oxidoreductase {ECO:0000313|EMBL:CDX13335.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
FAD dependent oxidoreductase id=2429422 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
putative FAD dependent oxidoreductase
Displaying items 1-30 of 61 in total

View Taxonomy