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berkeley_reactor_200306_biofilm_scaffold_140837_13

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(12996..14003)

Top 3 Functional Annotations

Value Algorithm Source
Ribose ABC transport system, permease protein RbsC n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2YPP9_9RHOB similarity UNIREF
DB: UNIREF100
  • Identity: 61.4
  • Coverage: 319.0
  • Bit_score: 403
  • Evalue 1.30e-109
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter {ECO:0000313|EMBL:CDX14978.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.0
  • Coverage: 317.0
  • Bit_score: 443
  • Evalue 1.60e-121
branched-chain amino acid transport system / permease component family protein similarity KEGG
DB: KEGG
  • Identity: 58.4
  • Coverage: 327.0
  • Bit_score: 359
  • Evalue 1.00e-96

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Taxonomy

Mesorhizobium plurifarium → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1008
GTGAGCGTCGTCACGGGTTCCGCCCCGCTCCGCCTGTCGCATCCGCCGGCCGCGCGCCTGCGCCGGGCGCTGGCCAGCGGCACCGGCATCATCGCCATCCTCTACGTCGTGCTCTACCTCGTCTATGCGGCCTGGGACCCGACGGCGCTCACCGCCGACACCGCCCTCAGCCTCACCAACAACGCCGCGCCGCTCGCCATCGCCGCCGCCGGCGAGACGCTGGTGGTGCTCGCCCGCGGCTTCGACCTCTCGGTCGCCGGCGTCATCTCGCTCACCAACGTCGTCATGGCGGCCTATCCGATGGACGGGCCGGGCGGCGCGCTGGCGAGCCTCGCCCTGTGCCTGGCCATCGGCGGCGCGGTGGGCTTCGCCAACGGCTATCTCGTCGCCGTGCTGCGCCTGCAATCGATCGCCGCCACGCTCGCCACCATGATCATCTGCCAGGGCCTCGCCCTGGTGGTGCTCGATGCGCCGGGCGGCACGGTGGCGGACTTCGTCAGCTACGAGCTCACCGACACGGTGTTCGGCGTGGTGCCGGTCGCCGGCCTCATCGTCGCCGCGGTGGTGGTGCTGTGGCTCGCCTTCCGGCGGACCGACACCGGCATCGCCCTCTATACCGTCGGCGCCGACGAGACCTCGGCCCAGCTCTCGGGCATCCCGGTGGTGCGCACCCGCTTCATCGGCTTCATCGGCGCGGGCATGCTCTACGGCCTCGCCGGCTTCATGCTCAGCGCCCAGACCGCGACCGGCGATCCCAATGGCGGCACCTCGTTCCTGATGCTGACCTTCGCGGCGGTGGCCCTCGGCGGCACCTCGCTGGCCGGCGGCCGCGGCGGGGTTGTCGGCAGCATCCTCGGCGCCGCCACGCTGCTGCTGCTGCAGAAGGTGCTGTTCGCCGGCGGCGTCTCCTCCTTCTACACCGGCATCTTCCAGGGCGTGGTGCTCGTCGTCGCGGTGGTCTTCGGCAGCCTCGTCACCCGTCTGGTTGAGCGCAGGGGACCGGCATGA
PROTEIN sequence
Length: 336
VSVVTGSAPLRLSHPPAARLRRALASGTGIIAILYVVLYLVYAAWDPTALTADTALSLTNNAAPLAIAAAGETLVVLARGFDLSVAGVISLTNVVMAAYPMDGPGGALASLALCLAIGGAVGFANGYLVAVLRLQSIAATLATMIICQGLALVVLDAPGGTVADFVSYELTDTVFGVVPVAGLIVAAVVVLWLAFRRTDTGIALYTVGADETSAQLSGIPVVRTRFIGFIGAGMLYGLAGFMLSAQTATGDPNGGTSFLMLTFAAVALGGTSLAGGRGGVVGSILGAATLLLLQKVLFAGGVSSFYTGIFQGVVLVVAVVFGSLVTRLVERRGPA*