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berkeley_reactor_200306_biofilm_scaffold_140837

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Displaying items 31-60 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_140837_31
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33927..34565)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000374B0B6
Leucine/isoleucine/valine transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CDX56468.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_140837_32
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34588..35433)
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037B9CDD
Leucine/isoleucine/valine transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CDX13329.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
amino acid ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_140837_33
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35430..36422)
DNA (993bp) protein (331aa)
hypothetical protein n=2 Tax=Xanthobacteraceae RepID=UPI000374794B
Putative High-affinity branched-chain amino acid transport system permease protein livM (LIV-I protein M) {ECO:0000313|EMBL:CDX56473.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
livM; branched-chain amino acid ABC transporter system, permease protein
berkeley_reactor_200306_biofilm_scaffold_140837_34
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36422..37372)
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037E0F0D
Leucine/isoleucine/valine transporter subunit membrane component of ABC superfamily {ECO:0000313|EMBL:CDX56475.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
livH; high-affinity branched-chain amino acid ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_140837_35
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37576..38685)
DNA (1110bp) protein (370aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003663979
Putative Extracellular ligand-binding receptor {ECO:0000313|EMBL:CDX32479.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
extracellular ligand-binding receptor
berkeley_reactor_200306_biofilm_scaffold_140837_36
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38865..39647)
DNA (783bp) protein (261aa)
GntR family transcriptional regulator {ECO:0000313|EMBL:CDX56477.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
GntR family transcriptional regulator id=2429420 bin=GWF1_Rhodobacteraceae_65_7 species=Mesorhizobium metallidurans genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_140837_37
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39782..40543
DNA (762bp) protein (254aa)
Putative Pyrroline-5-carboxylate reductase {ECO:0000313|EMBL:CDX56479.1}; EC=1.5.1.2 {ECO:0000313|EMBL:CDX56479.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Pyrroline-5-carboxylate reductase id=2864441 bin=GWF1_Rhodobacteraceae_65_7 species=Pseudomonas sp. genus=unknown taxon_order=unknown taxon_class=unknown phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
pyrroline-5-carboxylate reductase
berkeley_reactor_200306_biofilm_scaffold_140837_38
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40540..41286)
DNA (747bp) protein (249aa)
Putative short-chain type dehydrogenase/reductase y4eK {ECO:0000313|EMBL:CDX56481.1}; EC=1.-.-.- {ECO:0000313|EMBL:CDX56481.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
putative short-chain type dehydrogenase/reductase y4eK (EC:1.-.-.-)
Putative short-chain type id=2429417 bin=GWF1_Rhodobacteraceae_65_7 species=Pseudomonas putida genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
berkeley_reactor_200306_biofilm_scaffold_140837_39
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41301..42239)
DNA (939bp) protein (313aa)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0ELF1_9BURK
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:CDX32495.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_140837_40
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42223..43056)
DNA (834bp) protein (278aa)
Alpha/beta hydrolase fold protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LRX7_9RHIZ
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:EKF20544.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
alpha/beta hydrolase
berkeley_reactor_200306_biofilm_scaffold_140837_41
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43053..43550)
DNA (498bp) protein (166aa)
Uncharacterized protein n=2 Tax=Bordetella bronchiseptica RepID=K4U0I1_BORBO
Cupin 2, conserved barrel domain protein {ECO:0000313|EMBL:CDX13285.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_140837_42
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43554..44450)
DNA (897bp) protein (299aa)
id=2429416 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Tax=GWF1_Rhodobacteraceae_65_7_curated
berkeley_reactor_200306_biofilm_scaffold_140837_43
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44498..44821)
DNA (324bp) protein (108aa)
NIPSNAP family containing protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JQU7_9PROT
NIPSNAP family containing protein {ECO:0000313|EMBL:CDX13304.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_140837_44
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45069..46052
DNA (984bp) protein (328aa)
acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha (EC:1.2.4.1)
TPP-dependent acetoin dehydrogenase alpha-subunit id=2429424 bin=GWF1_Rhodobacteraceae_65_7 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Tax=GWF1_Rhodobacteraceae_65_7_curated
berkeley_reactor_200306_biofilm_scaffold_140837_45
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46055..47029
DNA (975bp) protein (325aa)
Pyruvate dehydrogenase E1 component subunit beta {ECO:0000313|EMBL:CDX32507.1}; EC=1.2.4.1 {ECO:0000313|EMBL:CDX32507.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Transketolase central region id=2429425 bin=GWF1_Rhodobacteraceae_65_7 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
transketolase
berkeley_reactor_200306_biofilm_scaffold_140837_46
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47040..48317
DNA (1278bp) protein (426aa)
Alpha/beta hydrolase fold id=2429426 bin=GWF1_Rhodobacteraceae_65_7 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
biotin/lipoyl attachment domain-containing protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
berkeley_reactor_200306_biofilm_scaffold_140837_47
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48381..49157)
DNA (777bp) protein (259aa)
SAM-dependent methyltransferase 2, in cluster with Hydroxyacylglutathione hydrolase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UHC2_9RHOB
Methyltransferase type 11 {ECO:0000313|EMBL:ETR77489.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_140837_48
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49279..50862)
DNA (1584bp) protein (528aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ID70_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL59462.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_140837_49
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51016..51969)
DNA (954bp) protein (318aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823}; Short=ACCase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000255|HAMAP-Rule:MF_00823};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=ACCA_XANP2
acetyl-CoA carboxylase carboxyltransferase subunit alpha
berkeley_reactor_200306_biofilm_scaffold_140837_50
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52063..52851)
DNA (789bp) protein (263aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q4D0_METSZ
short-chain dehydrogenase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CCJ07229.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
berkeley_reactor_200306_biofilm_scaffold_140837_51
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52848..53336)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000381F8AE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK50785.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
berkeley_reactor_200306_biofilm_scaffold_140837_52
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53403..54461)
DNA (1059bp) protein (353aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000380AC77
Uncharacterized protein {ECO:0000313|EMBL:KFG66801.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_140837_53
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55034..56815
DNA (1782bp) protein (594aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, subunits gamma and tau n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4R5_9BRAD
DNA polymerase III, subunits gamma and tau {ECO:0000313|EMBL:EFI52945.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
berkeley_reactor_200306_biofilm_scaffold_140837_54
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56907..57230
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003747848
hypothetical protein
Nucleoid-associated protein M446_4242 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_140837_55
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57243..57848
DNA (606bp) protein (202aa)
Recombination protein RecR n=1 Tax=Nitratireductor indicus C115 RepID=K2NYG7_9RHIZ
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
recombination protein RecR
berkeley_reactor_200306_biofilm_scaffold_140837_56
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57862..58164
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XA91_RHIFR
Uncharacterized protein {ECO:0000313|EMBL:KGF70394.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_140837_57
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58241..58768
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0Q4Y6_9RHOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL27049.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
berkeley_reactor_200306_biofilm_scaffold_140837_58
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58765..59814
DNA (1050bp) protein (350aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
methylenetetrahydrofolate reductase n=1 Tax=Paracoccus sp. N5 RepID=UPI00037059FE
oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_140837_59
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59825..60907)
DNA (1083bp) protein (361aa)
Cobalamin synthesis protein P47K n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZBY8_METPB
cobalamin synthesis protein P47K
Cobalamin synthesis protein P47K {ECO:0000313|EMBL:ACB79331.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
berkeley_reactor_200306_biofilm_scaffold_140837_60
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61071..62594
DNA (1524bp) protein (508aa)
Fis family transcriptional regulator n=1 Tax=Methylocystis parvus RepID=UPI00030A508A
two component sigma54 specific transcriptional regulator, Fis family
Two component sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:CCJ07026.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
Displaying items 31-60 of 61 in total

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