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berkeley_reactor_200306_biofilm_scaffold_140837_60

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 61071..62594

Top 3 Functional Annotations

Value Algorithm Source
Fis family transcriptional regulator n=1 Tax=Methylocystis parvus RepID=UPI00030A508A similarity UNIREF
DB: UNIREF100
  • Identity: 72.6
  • Coverage: 493.0
  • Bit_score: 695
  • Evalue 2.50e-197
two component sigma54 specific transcriptional regulator, Fis family similarity KEGG
DB: KEGG
  • Identity: 71.1
  • Coverage: 502.0
  • Bit_score: 682
  • Evalue 4.70e-194
Two component sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:CCJ07026.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.1
  • Coverage: 502.0
  • Bit_score: 682
  • Evalue 2.30e-193

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Taxonomy

Methylocystis sp. SC2 → Methylocystis → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1524
ATGACCGCGACGATCCTGATCGCCGACGACGATCCAGTCCAGCGCCGCCTGCTCGAAGCCACGCTGCGCCGCTTCGGCTACGAGGTCAGCCTGGTCGAGGGCGGCGAGGCCGCGCTCCGCGCGCTCGAATCGCATGACTTCGACGTGATGATTCTCGATCTCGTCATGCCCGACCTCGACGGCATGGGCGTGCTGGAGCGCATGCGCGACAAGGGCCTGGAGACGCCGGTCATCGTCCAGACCGCCCACGGCTCGATCGACGCGGTGATCTCGGCCATGCGCGCCGGCGCCGCCGATTTCGTGGTGAAGCCGGTGGGCGCCGAGCGCCTGCAGGTCTCGATCCGCAACGCCATGAAGAGCCGGGCGCTGGAGGGCGAGGTGCGCCTGCTCTCGCGCCGCGCCGCCGGCACGCTCGGCTTCCGCGACCTCGTCAGCCGCAGCCCGGAGATGGAGCGGGTGATCCGCCTCGGCGAGCGCGCCGCCGCCTCGGGCATCCCCGTGCTGATCGAGGGCGAATCGGGCGTCGGCAAGGAGGTCGTGGCGCGGGCGATCCAAGGCGCGAGCGAGCGCCGCGGCAAGGCCTTCATCGCGGTGAATTGCGGCGCTTTGCCGGCTAATCTCGCCGAATCGATCCTGTTCGGCCACGAGAAGGGCGCGTTCACCGGCGCGAGCGAGCGCCATGTCGGCAAGTTCGCCGAGGCCAATGGCGGCACGCTCTTCCTCGACGAGGTCGGCGAGCTCACCCCCGACATCCAGGTCAAGCTGCTGCGCGCCCTGCAGGAGGGCGAGGTCGACCCGGTCGGCGCCAAGCGGCCGGTGAAGATCGATTTCCGCCTGATCTCCGCCACCAACAAGAACCTGATCGAGCTGGTGAAGGAGGGCAAGTTCCGCGAGGACCTCTATTATCGGCTGCACGTCTTCCCGGTGATGCTGCCCCCGCTGCGGGCTCGCCGGGAGGACGTTCCCGACCTCGCCCGCCACTTCATGGCCCGCTTCGCCGCCGAGGAGGGCCGCAAGATCCGCTCGATCACCGCCGAGGCCCTGGCGCTGCTCGTCGCCTATGACTGGCCGGGCAATGTCCGCCAGCTGGAGAACACCCTGTTCCGCGCCGTGGTCCTGGCCGACGGCGACGAGCTCGGCGTCGCCGAGTTCCCGCAGATCGCCGCCCTGGTCGAGGGCTTCGACGTGCGCATCCCCGCCGCGCCGGTGCTGCCGCCCAAGCCCGTCCATGCCGGGCCGGCCATGATCACCGGCCAGCCCCTGCGCGAGGTGGTGACAGTGCGCGACCCCCACACGCTGCCTCTGCTCGACGGGCGCGGCGACGTGCGCAGCATGGAGGCGATCGAGACCGAGACGCTGAAATTCGCCATCCGGCACTATCGCGGCCAGATGACGGAGGTCGCCCGCAAGCTCGGCATCGGCCGCTCGACGCTCTATCGCAAGCTTAAGGAGCTCGGCCTCGAGGCCAGCGTGCCGCAGGGCTGTGGTCTGGAGGACACGAGCGCTGGCGAAGCCGCGGCGTGA
PROTEIN sequence
Length: 508
MTATILIADDDPVQRRLLEATLRRFGYEVSLVEGGEAALRALESHDFDVMILDLVMPDLDGMGVLERMRDKGLETPVIVQTAHGSIDAVISAMRAGAADFVVKPVGAERLQVSIRNAMKSRALEGEVRLLSRRAAGTLGFRDLVSRSPEMERVIRLGERAAASGIPVLIEGESGVGKEVVARAIQGASERRGKAFIAVNCGALPANLAESILFGHEKGAFTGASERHVGKFAEANGGTLFLDEVGELTPDIQVKLLRALQEGEVDPVGAKRPVKIDFRLISATNKNLIELVKEGKFREDLYYRLHVFPVMLPPLRARREDVPDLARHFMARFAAEEGRKIRSITAEALALLVAYDWPGNVRQLENTLFRAVVLADGDELGVAEFPQIAALVEGFDVRIPAAPVLPPKPVHAGPAMITGQPLREVVTVRDPHTLPLLDGRGDVRSMEAIETETLKFAIRHYRGQMTEVARKLGIGRSTLYRKLKELGLEASVPQGCGLEDTSAGEAAA*