ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_157852_15

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 13345..14556

Top 3 Functional Annotations

Value Algorithm Source
Secretion protein HlyD n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L619_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 46.2
  • Coverage: 385.0
  • Bit_score: 302
  • Evalue 3.70e-79
RND transporter MFP subunit {ECO:0000313|EMBL:KFA89764.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.4
  • Coverage: 390.0
  • Bit_score: 322
  • Evalue 8.20e-85
RND family efflux transporter MFP subunit similarity KEGG
DB: KEGG
  • Identity: 45.7
  • Coverage: 398.0
  • Bit_score: 299
  • Evalue 8.80e-79

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Cystobacter violaceus → Cystobacter → Myxococcales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1212
ATGTCGGACCCCGATGAAAGAGTGCCCAACGGCCGGCCCAGCCGCGTGACCTCCGTGCTGGTCGGCGTGGCGGTCCTGGCGATCCTGGCGGGAACGGTGGCCGCCGCCGTCATGGCGCAGGGCCAGCCGCCGCCGGCCGCGGCCGCGCCGTCGGCGCCGACGCCGGTCGAGACCGCGCTCGCCGAGCGTCGCGACGTGCCGCATCTCGTCGAGGTGGTCGGCACCGTCCAGCCCCTGCAGAGCGTCATGCTGCGCACCCGCGTCGACGGCGTCCTGACGCAGGTGCTCTTCGAGGAGGGCGACCACGTCCAGGCCGGCCAGCTCATCGCCACCATCGACGACCGCGCCTACCGGGCGGCCCTCGCCGCGGCCGAGGCGCAGCTGTCGCGCGACCGGGCGCAGCTGCGCCTGGCCGAGCTCGACCTCGAGCGCAGCCGCACGCTCCTGGAGCGCAAGGTGGCGGCGCAGCAGGCCGTCGACCAGCGCCTGGCCGAGCTCGACCAGGCCAAGGCGCTGGTGGCGCTGGACGAGGCCAATGTCGAGGCGGCCCGGACCAATCTCTCCTTCACGCAGATCCAGTCGCCGATCGCCGGCCGCGCCGGCATCCGCCTCATCGATCCCGGCAATCTCGCCCGCCAGGGCGATGCCGCCGGCATCGTCTCGGTGACGCAGCTCGACCCGATCTCCGTGGTCTTCCCGGTGCCGCAGCAGCTCCTCGACGGCCTGCGCGACCAGGCCCGGCAGCCCGGCGGCACCATGGCTGACGTGGTCGACCGCGCCACCGGCGCGGTGCTGGCGCGCGGGCCGATCACCGCCTTCGACAACCAGCTCGACAGCGCCACCGGGACGGCGCGGGTGCGCGCCGTGCTGGCCAATGCCGACGAGCGGCTGACGCCCGGCGCCTTCGTCTCGGTCCGCGTCCGCGCCGGCGCCTCGCCGGCGGCGGTGACGGTCCCCAAGGTGGCGGTGCGTCCGGGCCTGGAAGGCAGCTTCGTCTACCGGGTGCGGGACGGGGCGGCCGAGCGGGTGCCGGTCCGGCTCGGCTACGCCGACGACGAGACGGCCGTGGTCGCCGAGGGCCTCGCGCCCGGCGACGAGATCGTCATCGACGGCCATTCCCGCCTGAGACAGGGCGCGCGCGTCGCCGCGACGGCCCGTCCCGCGCCGGCGGCGGCCGAGACCGCCGCGCTCCCGGGGGCGCCGCGATCGTGA
PROTEIN sequence
Length: 404
MSDPDERVPNGRPSRVTSVLVGVAVLAILAGTVAAAVMAQGQPPPAAAAPSAPTPVETALAERRDVPHLVEVVGTVQPLQSVMLRTRVDGVLTQVLFEEGDHVQAGQLIATIDDRAYRAALAAAEAQLSRDRAQLRLAELDLERSRTLLERKVAAQQAVDQRLAELDQAKALVALDEANVEAARTNLSFTQIQSPIAGRAGIRLIDPGNLARQGDAAGIVSVTQLDPISVVFPVPQQLLDGLRDQARQPGGTMADVVDRATGAVLARGPITAFDNQLDSATGTARVRAVLANADERLTPGAFVSVRVRAGASPAAVTVPKVAVRPGLEGSFVYRVRDGAAERVPVRLGYADDETAVVAEGLAPGDEIVIDGHSRLRQGARVAATARPAPAAAETAALPGAPRS*