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berkeley_reactor_200306_biofilm_scaffold_157852

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_157852_1
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

644..1129
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000368699D
3-demethylubiquinone-9 3-methyltransferase
Tax=RBG_13_Acidobacteria_68_16_curated
berkeley_reactor_200306_biofilm_scaffold_157852_2
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1141..2304)
DNA (1164bp) protein (388aa)
PREDICTED: hippocampus abundant transcript 1 protein-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C180EC
Major facilitator superfamily protein {ECO:0000313|EMBL:EJZ20632.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
tetA; class A tetracycline resistance protein
berkeley_reactor_200306_biofilm_scaffold_157852_3
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2379..2990
DNA (612bp) protein (204aa)
Tetracycline repressor protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TUU8_9RHIZ
Tetracycline repressor protein {ECO:0000313|EMBL:ENN84244.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
tetR; tetracycline repressor protein, class A
berkeley_reactor_200306_biofilm_scaffold_157852_4
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3000..3377)
DNA (378bp) protein (126aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IM84_AZOC5
hypothetical protein
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_157852_5
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3380..3661)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C016_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM75168.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_157852_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4008..5996
DNA (1989bp) protein (663aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Transketolase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTT4_9RHIZ
transketolase
berkeley_reactor_200306_biofilm_scaffold_157852_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6177..7187
DNA (1011bp) protein (337aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
gap; glyceraldehyde 3-phosphate dehydrogenase (EC:1.2.1.12)
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Rhizobium mongolense RepID=UPI0003B7A8E5
berkeley_reactor_200306_biofilm_scaffold_157852_8
unknown

Not on your lists

7231..7368
DNA (138bp) protein (46aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_157852_9
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7445..8641
DNA (1197bp) protein (399aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
Phosphoglycerate kinase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WTN5_9BRAD
berkeley_reactor_200306_biofilm_scaffold_157852_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8850..9500
DNA (651bp) protein (217aa)
Thiamine-phosphate pyrophosphorylase ThiE {ECO:0000313|EMBL:KFC66492.1}; EC=2.5.1.3 {ECO:0000313|EMBL:KFC66492.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
thiamine phosphate pyrophosphorylase (EC:2.5.1.3)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000305504F
berkeley_reactor_200306_biofilm_scaffold_157852_11
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9497..10450
DNA (954bp) protein (318aa)
TPR repeat, SEL1 subfamily n=1 Tax=Rhodovulum sp. PH10 RepID=J6JCF9_9RHOB
TPR repeat, SEL1 subfamily {ECO:0000313|EMBL:EJW12920.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
Sel1 repeat-containing protein
berkeley_reactor_200306_biofilm_scaffold_157852_12
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10553..11971)
DNA (1419bp) protein (473aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
sensor histidine kinase protein (EC:2.7.13.3)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000305C9B3
berkeley_reactor_200306_biofilm_scaffold_157852_13
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11968..12687)
DNA (720bp) protein (240aa)
chemotaxis protein CheY n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E63D68
Chemotaxis protein CheY {ECO:0000313|EMBL:KGM34261.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ompR-2; transcriptional regulatory protein OmpR 2
berkeley_reactor_200306_biofilm_scaffold_157852_14
unknown

Not on your lists

12904..13254
DNA (351bp) protein (117aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_157852_15
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13345..14556
DNA (1212bp) protein (404aa)
Secretion protein HlyD n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L619_9GAMM
RND transporter MFP subunit {ECO:0000313|EMBL:KFA89764.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
RND family efflux transporter MFP subunit
berkeley_reactor_200306_biofilm_scaffold_157852_16
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14553..17687
DNA (3135bp) protein (1045aa)
Multidrug resistance protein MdtB (Multidrug transporter mdtB) n=1 Tax=Pseudomonas aeruginosa (strain PA7) RepID=A6V862_PSEA7
Multidrug resistance protein MdtB (Multidrug transporter mdtB) {ECO:0000313|EMBL:ABR85331.1}; TaxID=381754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa (strain PA7).;"
multidrug ABC transporter
berkeley_reactor_200306_biofilm_scaffold_157852_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17701..18165)
DNA (465bp) protein (155aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W592_9GAMM
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EIL94633.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Glyoxalase/bleomycin resistance protein/dioxygenase
berkeley_reactor_200306_biofilm_scaffold_157852_18
Phaeodactylibacter xiamenensis, Phaeodactylibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18227..19546)
DNA (1320bp) protein (440aa)
2,2-dialkylglycine decarboxylase (EC:4.1.1.64)
2,2-dialkylglycine decarboxylase n=1 Tax=Variovorax paradoxus RepID=UPI000366D410
2,2-dialkylglycine decarboxylase {ECO:0000313|EMBL:KGE85642.1}; TaxID=1524460 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Phaeodactylibacter.;" source="Phaeodactylibacter xiamenensis.;"
berkeley_reactor_200306_biofilm_scaffold_157852_19
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19678..20184
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003637A07
Transcription regulator AsnC {ECO:0000313|EMBL:EJZ34456.1}; Flags: Fragment;; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
AsnC family transcription regulator protein
berkeley_reactor_200306_biofilm_scaffold_157852_20
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20451..21377)
DNA (927bp) protein (309aa)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain-containing protein 2 n=1 Tax=Achromobacter piechaudii HLE RepID=J4QPE6_9BURK
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:CDX36123.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
glyoxylate reductase
berkeley_reactor_200306_biofilm_scaffold_157852_21
unknown

Not on your lists

21552..21923
DNA (372bp) protein (124aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_157852_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22035..22310)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V492_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU39286.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
berkeley_reactor_200306_biofilm_scaffold_157852_23
unknown

Not on your lists

comp(22337..22552)
DNA (216bp) protein (72aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_157852_24
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22549..23028)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TGE7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE05535.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_157852_25
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23418..24494
DNA (1077bp) protein (359aa)
AraC family transcriptional regulator n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZET6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC36236.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
AraC family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_157852_26
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24577..26178
DNA (1602bp) protein (534aa)
Putative Beta-lactamase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TKL4_9BRAD
Putative Beta-lactamase {ECO:0000313|EMBL:CCE07002.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
beta-lactamase
berkeley_reactor_200306_biofilm_scaffold_157852_27
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26527..27252)
DNA (726bp) protein (242aa)
aldolase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B50FC7
Uncharacterized protein {ECO:0000313|EMBL:CDX36120.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
Class II aldolase/adducin family protein
berkeley_reactor_200306_biofilm_scaffold_157852_28
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27567..28271
DNA (705bp) protein (235aa)
HTH-type transcriptional regulator n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P5M0_AZOS1
Putative Uncharacterized HTH-type transcriptional regulator in unstable DNA locus {ECO:0000313|EMBL:CDX36126.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
HTH-type transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_157852_29
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28334..29446
DNA (1113bp) protein (371aa)
ABC transporter, binding protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EY97_9RHIZ
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:CDX36131.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
Spermidine/putrescine-binding protein periplasmic protein
berkeley_reactor_200306_biofilm_scaffold_157852_30
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29469..30311
DNA (843bp) protein (281aa)
Opine/polyamine ABC transporter, permease protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EK17_9RHIZ
Opine/polyamine ABC transporter, permease protein {ECO:0000313|EMBL:CDX36135.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
binding-protein-dependent transporter inner membrane component family protein 60
Displaying items 1-30 of 55 in total

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