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berkeley_reactor_200306_biofilm_scaffold_157852

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Displaying items 31-55 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_157852_31
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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30308..31093
DNA (786bp) protein (262aa)
Putative ABC transporter, permease protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EIR1_9RHIZ
Putative ABC transporter, permease protein {ECO:0000313|EMBL:CCV04564.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
binding-protein-dependent transporter inner membrane component family protein 59
berkeley_reactor_200306_biofilm_scaffold_157852_32
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31124..32137
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F3H4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV04563.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
amidinotransferase
berkeley_reactor_200306_biofilm_scaffold_157852_33
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32154..33224
DNA (1071bp) protein (357aa)
Polyamine transporter subunit ATP-binding component of ABC superfamily n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F030_9RHIZ
Putrescine transporter subunit: ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CDX36143.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_157852_34
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33257..34618
DNA (1362bp) protein (454aa)
Xaa-Pro aminopeptidase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z260_9RHIZ
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:CDX36145.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
Xaa-Pro aminopeptidase
berkeley_reactor_200306_biofilm_scaffold_157852_35
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34775..35824
DNA (1050bp) protein (350aa)
2OG-Fe(II) oxygenase (EC:1.14.11.9)
2OG-Fe(II) oxygenase superfamily {ECO:0000313|EMBL:ABQ34668.1}; EC=1.14.11.9 {ECO:0000313|EMBL:ABQ34668.1};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
2OG-Fe(II) oxygenase superfamily n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EES4_BRASB
berkeley_reactor_200306_biofilm_scaffold_157852_36
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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35850..37178
DNA (1329bp) protein (443aa)
oahs; O-acetylhomoserine sulfhydrylase (EC:2.5.1.49)
O-acetylhomoserine sulfhydrolase {ECO:0000313|EMBL:ABQ34669.1}; EC=2.5.1.49 {ECO:0000313|EMBL:ABQ34669.1};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
O-acetylhomoserine sulfhydrolase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EES5_BRASB
berkeley_reactor_200306_biofilm_scaffold_157852_37
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37213..38244
DNA (1032bp) protein (344aa)
ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein n=2 Tax=Rhodopseudomonas palustris RepID=B3QIQ7_RHOPT
nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein
Possible ABC transport substrate-binding periplasmic protein {ECO:0000313|EMBL:CAE28072.1}; Flags: Precursor;; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
berkeley_reactor_200306_biofilm_scaffold_157852_38
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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38246..39247
DNA (1002bp) protein (334aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QIQ8_RHOPT
ABC transporter inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACF01411.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
berkeley_reactor_200306_biofilm_scaffold_157852_39
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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39247..40038
DNA (792bp) protein (264aa)
Alkanesulfonate ABC transporter, ATP binding protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AXB4_AZOBR
ssuB; alkanesulfonate ABC transporter, ATP binding protein
Alkanesulfonate ABC transporter, ATP binding protein {ECO:0000313|EMBL:CCD02523.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
berkeley_reactor_200306_biofilm_scaffold_157852_40
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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40046..40321
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QIR0_RHOPT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACF01413.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
berkeley_reactor_200306_biofilm_scaffold_157852_41
bacterium YEK0313, Bacteria

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comp(40420..41172)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000373A0DA
Integral membrane protein TerC family protein {ECO:0000313|EMBL:CEJ15752.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
terC; integral membrane protein
berkeley_reactor_200306_biofilm_scaffold_157852_42
Mesorhizobium sp. L2C067A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41373..42041
DNA (669bp) protein (223aa)
UPI0003D0592F related cluster n=1 Tax=unknown RepID=UPI0003D0592F
Chemotaxis protein CheY {ECO:0000313|EMBL:ESZ25378.1}; TaxID=1287106 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C067A000.;"
tctD; winged helix family two component transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_157852_43
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42034..43422
DNA (1389bp) protein (463aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
histidine kinase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI0002E8FCDC
integral membrane sensor signal transduction histidine kinase
berkeley_reactor_200306_biofilm_scaffold_157852_44
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43419..44501
DNA (1083bp) protein (361aa)
Periplasmic iron-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RD39_PELHB
periplasmic iron-binding protein
Periplasmic iron-binding protein {ECO:0000313|EMBL:AEQ53789.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
berkeley_reactor_200306_biofilm_scaffold_157852_45
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(44515..44925)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QEB1_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGY57213.1}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
berkeley_reactor_200306_biofilm_scaffold_157852_46
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(44922..45173)
DNA (252bp) protein (84aa)
Prevent-host-death family protein n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QE23_9CYAN
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:AGY57212.1}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
berkeley_reactor_200306_biofilm_scaffold_157852_47
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45206..46318
DNA (1113bp) protein (371aa)
serine acetyltransferase n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI00034B8A69
bacterial transferase hexapeptide family protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
berkeley_reactor_200306_biofilm_scaffold_157852_48
Burkholderia sp. CCGE1001, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46325..47107)
DNA (783bp) protein (261aa)
MTA/SAH nucleosidase (EC:3.2.2.9)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; Flags: Precursor;; TaxID=640510 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. CCGE1001.;"
MTA/SAH nucleosidase n=1 Tax=Burkholderia sp. CCGE1001 RepID=E8YKE4_9BURK
berkeley_reactor_200306_biofilm_scaffold_157852_49
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47104..49011)
DNA (1908bp) protein (636aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
hypothetical protein n=1 Tax=Ancylobacter sp. FA202 RepID=UPI00037C156D
SufS subfamily cysteine desulfurase
berkeley_reactor_200306_biofilm_scaffold_157852_50
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49107..50054)
DNA (948bp) protein (316aa)
membrane protein n=1 Tax=Xanthobacteraceae RepID=UPI00036C423E
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:ABD89171.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
berkeley_reactor_200306_biofilm_scaffold_157852_51
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50556..51473
DNA (918bp) protein (306aa)
ABC transporter n=1 Tax=Kaistia granuli RepID=UPI00036F6B7D
ABC transporter {ECO:0000313|EMBL:KER72943.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
substrate binding domain of ABC-type glycine betaine transport system family protein
berkeley_reactor_200306_biofilm_scaffold_157852_52
Burkholderia oklahomensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51500..52714
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036BCD8F
binding--dependent transport system inner membrane component family protein
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:AIO68261.1}; TaxID=342113 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia oklahomensis.;"
berkeley_reactor_200306_biofilm_scaffold_157852_53
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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52711..53646
DNA (936bp) protein (312aa)
yehX; putative osmoprotectant uptake system ATP-binding protein yehX (EC:3.6.3.-)
Putative osmoprotectant uptake system ATP-binding protein yehX {ECO:0000313|EMBL:AJK46372.1}; EC=3.6.3.- {ECO:0000313|EMBL:AJK46372.1};; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003817563
berkeley_reactor_200306_biofilm_scaffold_157852_54
Burkholderia sp. 2002721687, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53643..54398
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036F7307
binding--dependent transport system inner membrane component family protein
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:AJY43114.1}; TaxID=1468409 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. 2002721687.;"
berkeley_reactor_200306_biofilm_scaffold_157852_55
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(54412..54804)
DNA (393bp) protein (131aa)
TonB family protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07T16_RHOP5
TonB family protein
TonB family protein {ECO:0000313|EMBL:ABJ04918.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
Displaying items 31-55 of 55 in total

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