ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_127385

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_127385_1
unknown

Not on your lists

comp(394..858)
DNA (465bp) protein (155aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_127385_2
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(1580..2869)
DNA (1290bp) protein (430aa)
pknB; serine/threonine kinase Pkn10 (EC:2.7.1.-)
Serine/threonine protein kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPT3_9BACT
Tax=RBG_16_Planctomycetes_64_12_curated
berkeley_reactor_200306_planktonic_scaffold_127385_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

3187..4215
DNA (1029bp) protein (343aa)
Putative deacylase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DN37_SINAD
deacylase
Putative deacylase {ECO:0000313|EMBL:AGA30240.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_127385_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

4414..5547
DNA (1134bp) protein (378aa)
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D7U8_SINAD
L-alanine-DL-glutamate epimerase-like protein
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:AGA25322.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_127385_5
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

5654..6997
DNA (1344bp) protein (448aa)
General substrate transporter:Major facilitator superfamily MFS_1 n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CE81_9PLAN
General substrate transporter:Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EDL57021.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
sugar phosphate permease
berkeley_reactor_200306_planktonic_scaffold_127385_6
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

7134..7430
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI00034987BC
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:AGA27500.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_127385_7
unknown

Not on your lists

7427..7636
DNA (210bp) protein (70aa)
plasmid stabilization system
berkeley_reactor_200306_planktonic_scaffold_127385_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

8618..11707
DNA (3090bp) protein (1030aa)
UPF0753 protein Sinac_5055 n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DK47_SINAD
UPF0753 protein Sinac_5055 {ECO:0000256|HAMAP-Rule:MF_01871}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_127385_9
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

11742..13133
DNA (1392bp) protein (464aa)
NADH:ubiquinone oxidoreductase subunit 5 (Chain L)/multisubunit Na+/H+ antiporter, MnhA subunit n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DII9_SINAD
NADH:ubiquinone oxidoreductase subunit L/multisubunit Na+/H+ antiporter, MnhA subunit
NADH:ubiquinone oxidoreductase subunit 5 (Chain L)/multisubunit Na+/H+ antiporter, MnhA subunit {ECO:0000313|EMBL:AGA29209.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_127385_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

13130..14638
DNA (1509bp) protein (503aa)
NADH:ubiquinone oxidoreductase subunit 4 (Chain M) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DK41_SINAD
NADH:ubiquinone oxidoreductase subunit 4 (chain M)
NADH:ubiquinone oxidoreductase subunit 4 (Chain M) {ECO:0000313|EMBL:AGA29210.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_127385_11
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14890..15699
DNA (810bp) protein (270aa)
Serine protease DO-like protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JIJ7_AGRRK
degPch1; serine protease DO-like protein
Serine protease {ECO:0000313|EMBL:KEA07897.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
berkeley_reactor_200306_planktonic_scaffold_127385_12
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(15833..17620)
DNA (1788bp) protein (596aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00036E57C6
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:ADV61765.1}; Flags: Precursor;; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
berkeley_reactor_200306_planktonic_scaffold_127385_13
unknown

Not on your lists

comp(17994..18668)
DNA (675bp) protein (225aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_127385_14
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(18830..20683)
DNA (1854bp) protein (618aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00036E57C6
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:ADV61765.1}; Flags: Precursor;; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
berkeley_reactor_200306_planktonic_scaffold_127385_15
Pseudomonas sp. GM18, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21122..22684)
DNA (1563bp) protein (521aa)
Putative transcriptional regulator with HTH domain n=1 Tax=Pseudomonas sp. GM18 RepID=J2NLK6_9PSED
Putative transcriptional regulator with HTH domain {ECO:0000313|EMBL:EJM18366.1}; TaxID=1144324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM18.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_127385_16
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(22677..23558)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R8Y6_PIRSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB15813.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
berkeley_reactor_200306_planktonic_scaffold_127385_17
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(24020..25486)
DNA (1467bp) protein (489aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003185588
RND family efflux transporter MFP subunit
Tax=RBG_16_Planctomycetes_64_12_curated
berkeley_reactor_200306_planktonic_scaffold_127385_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(25486..28806)
DNA (3321bp) protein (1107aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002E87240
Acriflavin resistance protein {ECO:0000313|EMBL:EEF57523.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
acriflavin resistance protein
Displaying 18 items

View Taxonomy