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berkeley_reactor_200306_planktonic_scaffold_126054

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_126054_1
unknown

Not on your lists

comp(2..85)
DNA (84bp) protein (28aa)
transposase family protein
berkeley_reactor_200306_planktonic_scaffold_126054_2
unknown

Not on your lists

371..931
DNA (561bp) protein (187aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_126054_3
unknown

Not on your lists

1471..1887
DNA (417bp) protein (139aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_126054_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

2362..3579
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DR36_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA31465.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_126054_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

4064..4564
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D7C3_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA25299.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_126054_6
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

4637..5650
DNA (1014bp) protein (338aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D8V6_SINAD
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGA25300.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_126054_7
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5920..6216
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00036FDB90
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG19839.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
berkeley_reactor_200306_planktonic_scaffold_126054_8
RBG_13_Actinobacteria_55_18_curated, Actinobacteria, Bacteria

Not on your lists

6743..9280
DNA (2538bp) protein (846aa)
ATP-dependent DNA ligase n=3 Tax=Amycolatopsis mediterranei RepID=D8HR62_AMYMU
lig; ATP-dependent DNA ligase
Tax=RBG_13_Actinobacteria_55_18_curated
berkeley_reactor_200306_planktonic_scaffold_126054_9
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(9366..10319)
DNA (954bp) protein (318aa)
DMT(Drug/metabolite transporter) superfamily permease n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DCP8_SINAD
DMT(drug/metabolite transporter) superfamily permease
DMT(Drug/metabolite transporter) superfamily permease {ECO:0000313|EMBL:AGA26411.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_126054_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(10309..10782)
DNA (474bp) protein (158aa)
Transcriptional regulator n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DB10_SINAD
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGA26412.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_126054_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

11412..12350
DNA (939bp) protein (313aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIB5_SINAD
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGA28605.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_126054_12
unknown

Not on your lists

12535..12882
DNA (348bp) protein (116aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_126054_13
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

13094..13963
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2QWG6_PIRSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB17769.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
berkeley_reactor_200306_planktonic_scaffold_126054_14
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

14284..14982
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJF1_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28801.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_126054_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15046..15285
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DHR0_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28802.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_126054_16
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15282..19256
DNA (3975bp) protein (1325aa)
DNA segregation ATPase, FtsK/SpoIIIE family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJ10_SINAD
DNA segregation ATPase, FtsK/SpoIIIE family {ECO:0000313|EMBL:AGA28803.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
DNA segregation ATPase FtsK
berkeley_reactor_200306_planktonic_scaffold_126054_17
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(19374..20210)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIW7_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28790.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_126054_18
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

20468..21163
DNA (696bp) protein (232aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0DER1_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27747.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_126054_19
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

21163..22182
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DG05_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27748.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_126054_20

Not on your lists

22233..23186
DNA (954bp) protein (318aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN61104.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Hypothetical membrane protein id=1908919 bin=GWD2_Clostridiales_32_19 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWD2_Clostridiales_32_19 organism_group=Firmicute organism_desc=a85
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_126054_21
unknown

Not on your lists

comp(23321..25192)
DNA (1872bp) protein (624aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_126054_22
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

25545..26858
DNA (1314bp) protein (438aa)
hypothetical protein n=1 Tax=Singulisphaera acidiphila RepID=UPI00037041D1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA25987.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_126054_23
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

26915..28453
DNA (1539bp) protein (513aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DAX6_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA25988.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_126054_24
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(28697..33304)
DNA (4608bp) protein (1536aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0D9C4_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA25989.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_126054_25
unknown

Not on your lists

33727..34515
DNA (789bp) protein (263aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_126054_26
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

35189..38776
DNA (3588bp) protein (1196aa)
Exonuclease V gamma subunit n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIQ9_SINAD
exonuclease V (RecBCD complex) subunit gamma
Exonuclease V gamma subunit {ECO:0000313|EMBL:AGA28703.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_126054_27
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

38773..42303
DNA (3531bp) protein (1177aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing n=2 Tax=Singulisphaera acidiphila RepID=L0DHG4_SINAD
ATP-dependent exonuclase V subunit beta
berkeley_reactor_200306_planktonic_scaffold_126054_28
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

42300..44408
DNA (2109bp) protein (703aa)
Exodeoxyribonuclease V, alpha subunit n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJ49_SINAD
exodeoxyribonuclease V subunit alpha
Exodeoxyribonuclease V, alpha subunit {ECO:0000313|EMBL:AGA28701.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_126054_29
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(44608..45639)
DNA (1032bp) protein (344aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DCT2_SINAD
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGA27184.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying 29 items

View Taxonomy