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berkeley_reactor_200306_planktonic_scaffold_52388

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_52388_1
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

606..1046
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00031BCDF1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY97295.1}; TaxID=471852 species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
berkeley_reactor_200306_planktonic_scaffold_52388_2
Streptomyces natalensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1138..1620
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00031BCDF1
Uncharacterized protein {ECO:0000313|EMBL:KIZ16735.1}; TaxID=1240678 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces natalensis ATCC 27448.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_52388_3
unknown

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1778..2596
DNA (819bp) protein (273aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_52388_4
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

2775..3686
DNA (912bp) protein (304aa)
Histone deacetylase superfamily n=2 Tax=Chloroflexus RepID=A9WDA8_CHLAA
histone deacetylase superfamily protein
Histone deacetylase superfamily {ECO:0000313|EMBL:ABY35075.1}; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl).;"
berkeley_reactor_200306_planktonic_scaffold_52388_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3726..4667)
DNA (942bp) protein (314aa)
Aldo/keto reductase, diketogulonate reductase n=2 Tax=Singulisphaera acidiphila RepID=L0DHS1_SINAD
aldo/keto reductase, diketogulonate reductase
Aldo/keto reductase, diketogulonate reductase {ECO:0000313|EMBL:AGA28914.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_52388_6
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(4980..5561)
DNA (582bp) protein (194aa)
Peroxiredoxin n=2 Tax=Singulisphaera acidiphila RepID=L0DQD0_SINAD
peroxiredoxin
Peroxiredoxin {ECO:0000313|EMBL:AGA31080.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_52388_7
unknown

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comp(6027..6776)
DNA (750bp) protein (250aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_52388_8

Not on your lists

comp(7532..10120)
DNA (2589bp) protein (863aa)
hypothetical protein n=1 Tax=Alistipes onderdonkii RepID=UPI0003648C60
Uncharacterized protein {ECO:0000313|EMBL:KKO11152.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative alpha-L-arabinofuranosidase
berkeley_reactor_200306_planktonic_scaffold_52388_9
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

10265..10759
DNA (495bp) protein (165aa)
MarR family transcriptional regulator n=1 Tax=Schlesneria paludicola RepID=UPI00029A563F
Probable marR-family transcription regulator {ECO:0000313|EMBL:EAQ81974.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
MarR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_52388_10
Rubinisphaera brasiliensis, Rubinisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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10825..11523
DNA (699bp) protein (233aa)
quercetin 2,3-dioxygenase n=1 Tax=Schlesneria paludicola RepID=UPI00029A1A75
pirin
Pirin domain protein {ECO:0000313|EMBL:ADY59593.1}; TaxID=756272 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rubinisphaera.;" source="Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /; NBRC 103401 / IFAM 1448) (Planctomyces brasiliensis).;"
berkeley_reactor_200306_planktonic_scaffold_52388_11
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11702..12331
DNA (630bp) protein (210aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
NAD(P)H quinone oxidoreductase n=1 Tax=Cupriavidus sp. WS RepID=UPI00037A2303
Trp repressor binding protein
berkeley_reactor_200306_planktonic_scaffold_52388_12
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12825..15110
DNA (2286bp) protein (762aa)
sensor histidine kinase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4DFC
ATPase {ECO:0000313|EMBL:KFG66660.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
GAF sensor signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_52388_13
Burkholderia sp. RPE67, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15113..15565
DNA (453bp) protein (151aa)
chemotaxis protein CheY n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4DFB
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:BAO86609.1}; TaxID=758796 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE67.;"
berkeley_reactor_200306_planktonic_scaffold_52388_14
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15578..17629
DNA (2052bp) protein (684aa)
PAS domain S-box n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DBL1_SINAD
PAS domain-containing protein
PAS domain S-box {ECO:0000313|EMBL:AGA26041.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_52388_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(17670..19109)
DNA (1440bp) protein (480aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQB3_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA31078.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_52388_16
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

19427..19642
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNP3_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA30468.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_52388_17
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

19894..20193
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R657_ISOPI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV60752.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
berkeley_reactor_200306_planktonic_scaffold_52388_18
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(20385..20984)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DG04_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28192.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_52388_19
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21094..21927)
DNA (834bp) protein (278aa)
Ankyrin repeat domain protein n=1 Tax=Amycolatopsis azurea DSM 43854 RepID=M2PK91_9PSEU
ankryin
Ankyrin {ECO:0000313|EMBL:AEA25704.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
berkeley_reactor_200306_planktonic_scaffold_52388_20
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(22162..26424)
DNA (4263bp) protein (1421aa)
Heme-binding protein n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R0M2_PIRSD
Heme-binding protein {ECO:0000313|EMBL:ADB16620.1}; Flags: Precursor;; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
heme-binding protein
Displaying 20 items

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