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berkeley_reactor_200306_planktonic_scaffold_220106

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_220106_1
unknown

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1..129
DNA (129bp) protein (43aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_220106_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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214..1569
DNA (1356bp) protein (452aa)
Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D7C2_SINAD
carbonic anhydrase/acetyltransferase
Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase {ECO:0000313|EMBL:AGA24765.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_220106_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(1604..2314)
DNA (711bp) protein (237aa)
UPF0173 metal-dependent hydrolase Sinac_0321 n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D5S1_SINAD
Zn-dependent hydrolase
UPF0173 metal-dependent hydrolase Sinac_0321 {ECO:0000256|HAMAP-Rule:MF_00457}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_220106_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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2625..3458
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D7F9_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA24763.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_220106_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(3944..5176)
DNA (1233bp) protein (411aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Glucose-1-phosphate adenylyltransferase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D640_SINAD
glucose-1-phosphate adenylyltransferase
berkeley_reactor_200306_planktonic_scaffold_220106_6
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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5329..7101
DNA (1773bp) protein (591aa)
Alkaline phosphatase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D7U2_SINAD
alkaline phosphatase
Alkaline phosphatase {ECO:0000313|EMBL:AGA24726.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_220106_7
Cyanothece sp. PCC 7425, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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7799..10561
DNA (2763bp) protein (921aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=395961 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7425 / ATCC 29141).;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HLZ2_CYAP4
multi-sensor signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_220106_8
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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10558..11004
DNA (447bp) protein (149aa)
Two-component system response regulator n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PAV0_9DELT
Two-component system response regulator {ECO:0000313|EMBL:EPX60231.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
response regulator, receiver
berkeley_reactor_200306_planktonic_scaffold_220106_9
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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11013..13379
DNA (2367bp) protein (789aa)
Sensory box histidine kinase/response regulator n=1 Tax=Synechococcus sp. (strain JA-3-3Ab) RepID=Q2JR31_SYNJA
sensory box histidine kinase/response regulator
Tax=RBG_16_Gamma2_65_34_curated
berkeley_reactor_200306_planktonic_scaffold_220106_10
Nocardia cyriacigeorgica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(13448..13978)
DNA (531bp) protein (177aa)
O-methyltransferase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C58D4
dmpM; O-demethylpuromycin-O-methyltransferase
O-demethylpuromycin-O-methyltransferase {ECO:0000313|EMBL:CCF62228.1}; TaxID=1127134 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia cyriacigeorgica (strain GUH-2).;"
berkeley_reactor_200306_planktonic_scaffold_220106_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(14901..15431)
DNA (531bp) protein (177aa)
Putative metal-binding protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DRJ1_SINAD
metal-binding protein
Putative metal-binding protein {ECO:0000313|EMBL:AGA30996.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_220106_12
Serratia sp. ATCC 39006, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15544..16095)
DNA (552bp) protein (184aa)
Putative transcriptional regulator, TetR family n=1 Tax=Serratia sp. ATCC 39006 RepID=V3TN19_9ENTR
transcriptional regulator, TetR family
Putative transcriptional regulator, TetR family {ECO:0000313|EMBL:ESN62220.1}; TaxID=104623 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. ATCC 39006.;"
berkeley_reactor_200306_planktonic_scaffold_220106_13
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16276..16899
DNA (624bp) protein (208aa)
Isochorismatase family protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T1V8_JANMA
isochorismatase
Isochorismatase family protein {ECO:0000313|EMBL:ABR90766.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
berkeley_reactor_200306_planktonic_scaffold_220106_14
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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17491..18054
DNA (564bp) protein (188aa)
RNA polymerase sigma factor, TIGR02999 family n=2 Tax=Singulisphaera acidiphila RepID=L0DHE1_SINAD
RNA polymerase sigma factor
RNA polymerase sigma factor, TIGR02999 family {ECO:0000313|EMBL:AGA28270.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_220106_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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18068..19852
DNA (1785bp) protein (595aa)
Protein kinase family protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DHW0_SINAD
protein kinase family protein
Protein kinase family protein {ECO:0000313|EMBL:AGA28271.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying 15 items

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