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berkeley_reactor_200306_planktonic_scaffold_192102

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_192102_1
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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582..1958
DNA (1377bp) protein (459aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0D767_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA24715.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_192102_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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2068..2829
DNA (762bp) protein (254aa)
Metal-dependent hydrolase, beta-lactamase superfamily III n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D5L0_SINAD
beta-lactamase superfamily metal-dependent hydrolase
Metal-dependent hydrolase, beta-lactamase superfamily III {ECO:0000313|EMBL:AGA24714.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_192102_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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3066..4043
DNA (978bp) protein (326aa)
GDP-D-mannose dehydratase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D7A4_SINAD
GDP-D-mannose dehydratase
GDP-D-mannose dehydratase {ECO:0000313|EMBL:AGA24713.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_192102_4

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comp(4066..7356)
DNA (3291bp) protein (1097aa)
WD-40 repeat n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C572D
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49278.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
sigma-70 family RNA polymerase sigma factor
berkeley_reactor_200306_planktonic_scaffold_192102_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

7736..9244
DNA (1509bp) protein (503aa)
Pentulose/hexulose kinase n=2 Tax=Singulisphaera acidiphila RepID=L0D7S6_SINAD
pentulose/hexulose kinase
Pentulose/hexulose kinase {ECO:0000313|EMBL:AGA24711.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_192102_6
R_OD1_Jorgensenbacteria_45_25b, Jorgensenbacteria, Parcubacteria, Bacteria

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comp(9721..10401)
DNA (681bp) protein (227aa)
Methyltransferase, FkbM family n=1 Tax=uncultured archaeon A07HR67 RepID=V4XWP4_9ARCH
FkbM family methyltransferase
Tax=RIFCSPLOWO2_01_FULL_OD1_Jorgensenbacteria_45_25b_curated
berkeley_reactor_200306_planktonic_scaffold_192102_7
unknown

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10899..11174
DNA (276bp) protein (92aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_192102_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(11275..12132)
DNA (858bp) protein (286aa)
TIGR00268 family protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D5J9_SINAD
hypothetical protein
TIGR00268 family protein {ECO:0000313|EMBL:AGA24704.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_192102_9
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(12443..13618)
DNA (1176bp) protein (392aa)
Cysteine desulfurase family protein n=2 Tax=Singulisphaera acidiphila RepID=L0D7R3_SINAD
cysteine desulfurase
Cysteine desulfurase family protein {ECO:0000313|EMBL:AGA24696.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_192102_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(13683..13898)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D745_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA24695.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying 10 items

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