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berkeley_reactor_200306_planktonic_scaffold_349413

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_349413_1
Pyrolobus fumarii, Pyrolobus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(16..645)
DNA (630bp) protein (210aa)
UBA/THIF-type NAD/FAD binding protein n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0EF02_PYRF1
UBA/THIF-type NAD/FAD binding protein
UBA/THIF-type NAD/FAD binding protein {ECO:0000313|EMBL:AEM38116.1}; TaxID=694429 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Pyrodictiaceae; Pyrolobus.;" source="Pyrolobus fumarii (strain DSM 11204 / 1A).;"
berkeley_reactor_200306_planktonic_scaffold_349413_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(807..3095)
DNA (2289bp) protein (763aa)
WD40 repeat-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) PF6_SINAD">RepID=L0DPF6_SINAD
WD40 repeat-containing protein
WD40 repeat-containing protein {ECO:0000313|EMBL:AGA30700.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_349413_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3227..5728)
DNA (2502bp) protein (834aa)
Putative pre-peptidase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DMU0_SINAD
Putative pre-peptidase {ECO:0000313|EMBL:AGA30699.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
pre-peptidase
berkeley_reactor_200306_planktonic_scaffold_349413_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(5932..7203)
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPC6_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA30698.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_349413_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(7356..9779)
DNA (2424bp) protein (808aa)
Ig-like domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) PF1_SINAD">RepID=L0DPF1_SINAD
Ig-like domain-containing protein {ECO:0000313|EMBL:AGA30695.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Ig-like domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_349413_6
unknown

Not on your lists

9894..10388
DNA (495bp) protein (165aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_349413_7
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(10702..14280)
DNA (3579bp) protein (1193aa)
peptidase M56 BlaR1 n=1 Tax=Schlesneria paludicola RepID=UPI00029AF603
Uncharacterized protein {ECO:0000313|EMBL:EDL57810.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
sigma-70 family RNA polymerase sigma factor
berkeley_reactor_200306_planktonic_scaffold_349413_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(14277..14720)
DNA (444bp) protein (148aa)
CopY family transcriptional regulator n=1 Tax=Schlesneria paludicola RepID=UPI00029B1FF2
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGA25766.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_349413_9
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15054..18002
DNA (2949bp) protein (983aa)
TPR repeat-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJH7_SINAD
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:AGA29000.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_349413_10
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

18109..18360
DNA (252bp) protein (84aa)
plasmid stabilization protein n=1 Tax=Anabaena sp. PCC 7108 RepID=UPI00034A3D4E
Plasmid stabilization system {ECO:0000313|EMBL:CBN58265.1}; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;"
plasmid stabilization system
berkeley_reactor_200306_planktonic_scaffold_349413_11
Cylindrospermum stagnale, Cylindrospermum, Nostocales, Cyanobacteria, Bacteria

Not on your lists

18373..18576
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Geminocystis herdmanii RepID=UPI00034BDBD8
Phd_YefM
Phd_YefM {ECO:0000313|EMBL:AFZ25003.1}; TaxID=56107 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Cylindrospermum.;" source="Cylindrospermum stagnale PCC 7417.;"
berkeley_reactor_200306_planktonic_scaffold_349413_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18717..19217
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4285
Variovorax paradoxus strain MEDvA23 contig_85, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21740.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_349413_13
unknown

Not on your lists

comp(19604..21514)
DNA (1911bp) protein (637aa)
PBS lyase HEAT domain protein repeat-containing protein n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2QXQ1_PIRSD
PBS lyase HEAT domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_349413_14
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

21908..22519
DNA (612bp) protein (204aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJB5_SINAD
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGA28925.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_349413_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

22695..25112
DNA (2418bp) protein (806aa)
Serine/threonine protein kinase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJW6_SINAD
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:AGA28926.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_349413_16
unknown

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comp(25137..25313)
DNA (177bp) protein (59aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_349413_17
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(25288..25770)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGQ7_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28564.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_349413_18
unknown

Not on your lists

comp(25811..25966)
DNA (156bp) protein (52aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_349413_19
Planctopirus limnophila, Planctopirus, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

26400..29867
DNA (3468bp) protein (1156aa)
Serine/threonine protein kinase-related protein n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SUY3_PLAL2
serine/threonine protein kinase-related protein
Serine/threonine protein kinase-related protein {ECO:0000313|EMBL:ADG69269.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
berkeley_reactor_200306_planktonic_scaffold_349413_20
Burkholderia caribensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30057..30731)
DNA (675bp) protein (225aa)
Putative intracellular protease/amidase n=1 Tax=Burkholderia sp. BT03 RepID=J2RKC4_9BURK
ThiJ/PfpI family protein {ECO:0000313|EMBL:ETY77462.1}; TaxID=1323664 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia caribensis MBA4.;"
ThiJ/PfpI domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_349413_21
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

comp(31113..32189)
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036CC0F5
DNA internalization-related competence protein ComEC/Rec2
Tax=CG_Arma_02
berkeley_reactor_200306_planktonic_scaffold_349413_22
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(32469..33020)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C595A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28181.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_349413_23
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(33004..34038)
DNA (1035bp) protein (345aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJ61_SINAD
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGA28716.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_349413_24
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(34170..35282)
DNA (1113bp) protein (371aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQP0_SINAD
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGA31288.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_349413_25
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(35408..36445)
DNA (1038bp) protein (346aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DE61_SINAD
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGA27150.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_349413_26
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(37144..39021)
DNA (1878bp) protein (626aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPI9_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA30735.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_349413_27
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(39102..40109)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0DMX6_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA30734.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_349413_28
unknown

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comp(40491..41417)
DNA (927bp) protein (309aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_349413_29
unknown

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41521..41646
DNA (126bp) protein (42aa)

This feature has no annotations

Displaying 29 items

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