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berkeley_reactor_200306_planktonic_scaffold_114424

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_114424_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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2..139
DNA (138bp) protein (46aa)
PA14 domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL26_9BACT
PA14 domain protein {ECO:0000313|EMBL:EEF59520.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_114424_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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87..875
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XME7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58989.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_114424_3
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(909..1865)
DNA (957bp) protein (319aa)
Cytochrome c class I n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZWJ5_OPITP
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:ACB73319.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_114424_4
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

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comp(1862..2578)
DNA (717bp) protein (239aa)
Cytochrome c class I n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZWJ5_OPITP
cytochrome c class I
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_114424_5
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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2733..3395
DNA (663bp) protein (221aa)
pcm-3; protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein L-isoaspartyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein-beta-aspartate methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q603H5_METCA
berkeley_reactor_200306_planktonic_scaffold_114424_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(3431..8932)
DNA (5502bp) protein (1834aa)
PA14 domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL26_9BACT
PA14 domain protein {ECO:0000313|EMBL:EEF59520.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PA14 domain protein
berkeley_reactor_200306_planktonic_scaffold_114424_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

9138..10643
DNA (1506bp) protein (502aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Carbamoyl-phosphate synthase L chain ATP-binding n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCJ8_9BACT
carbamoyl-phosphate synthase large subunit
berkeley_reactor_200306_planktonic_scaffold_114424_8
unknown

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10684..10911
DNA (228bp) protein (76aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_114424_9
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

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11597..11827
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XET6_9BACT
hypothetical protein
Tax=RBG_16_Chloroflexi_54_18_curated
berkeley_reactor_200306_planktonic_scaffold_114424_10
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

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comp(12360..13157)
DNA (798bp) protein (266aa)
Bacteriophage protein gp37 n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9R747_9DELT
Gp37Gp68 family protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_114424_11
R_WOR_2_52_10, WOR-2, Bacteria

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comp(13227..13916)
DNA (690bp) protein (230aa)
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_52_10_curated
Displaying 11 items

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