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berkeley_reactor_200306_planktonic_scaffold_220752

Search features with annotation key words

Displaying items 1-30 of 373 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_220752_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

211..1698
DNA (1488bp) protein (496aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCZ0_9BACT
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:EEF61587.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220752_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1775..2473
DNA (699bp) protein (233aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF90_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF61588.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_220752_3
unknown

Not on your lists

comp(2545..3255)
DNA (711bp) protein (237aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_220752_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

3602..8467
DNA (4866bp) protein (1622aa)
Alpha-L-rhamnosidase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ27_9BACT
Alpha-L-rhamnosidase {ECO:0000313|EMBL:EEF60065.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220752_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

8667..11609
DNA (2943bp) protein (981aa)
Immunoglobulin I-set domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSH7_9BACT
Immunoglobulin I-set domain protein {ECO:0000313|EMBL:EEF57209.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
carbohydrate binding family 6
berkeley_reactor_200306_planktonic_scaffold_220752_6
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

11944..12777
DNA (834bp) protein (278aa)
Putative uncharacterized protein id=3056963 bin=GWF2_Lentisphaerae_50_93 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
Tax=CG_Arma_02
berkeley_reactor_200306_planktonic_scaffold_220752_7
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13151..14122)
DNA (972bp) protein (324aa)
Chitinase n=1 Tax=Clostridium termitidis CT1112 RepID=S0FSA9_9CLOT
Chitinase {ECO:0000313|EMBL:EMS71348.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
chitinase
berkeley_reactor_200306_planktonic_scaffold_220752_8
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14138..14983)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FGM0_FLAJ1
Cytochrome c551/c552 {ECO:0000313|EMBL:KIA93304.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220752_9
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(14987..18271)
DNA (3285bp) protein (1095aa)
Hyaluronate lyase n=1 Tax=Paenibacillus mucilaginosus K02 RepID=I0BMW4_9BACL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC83655.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_220752_10
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(18262..21849)
DNA (3588bp) protein (1196aa)
Glycoside hydrolase family 2, sugar binding n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01U55_SOLUE
glycoside hydrolase
Glycoside hydrolase {ECO:0000313|EMBL:AKC82973.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_220752_11
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22117..23268
DNA (1152bp) protein (384aa)
glucan 1,3-beta-glucosidase (EC:3.2.1.58)
Glucan 1,3-beta-glucosidase n=1 Tax=Thauera phenylacetica B4P RepID=N6ZSA6_9RHOO
Glucan 1,3-beta-glucosidase {ECO:0000313|EMBL:ENO97377.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
berkeley_reactor_200306_planktonic_scaffold_220752_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(23272..23901)
DNA (630bp) protein (210aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAM6_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF63061.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_220752_13
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(23898..26111)
DNA (2214bp) protein (738aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR83_OPITP
integral membrane sensor signal transduction histidine kinase
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:ACB74570.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_220752_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

26637..30449
DNA (3813bp) protein (1271aa)
Uncharacterized protein (Fragment) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQF8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57883.1}; Flags: Fragment;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_220752_15
GWF2_Planctomycetes_42_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

30492..31451
DNA (960bp) protein (320aa)
Protein containing DUF1559 id=4670588 bin=GWF2_Planctomycetes_42_9 species=unknown genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
hypothetical protein
Tax=GWF2_Planctomycetes_42_9_curated
berkeley_reactor_200306_planktonic_scaffold_220752_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

31574..32440
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQF9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57884.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LmbE family protein
berkeley_reactor_200306_planktonic_scaffold_220752_17
unknown

Not on your lists

comp(32828..33019)
DNA (192bp) protein (64aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_220752_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(32973..34451)
DNA (1479bp) protein (493aa)
Phosphoesterase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2N5_9BACT
Phosphoesterase {ECO:0000313|EMBL:EDY19475.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
phosphoesterase family protein
berkeley_reactor_200306_planktonic_scaffold_220752_19
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(34733..36043)
DNA (1311bp) protein (437aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003601DB6
glycoside hydrolase
Glycoside hydrolase family 2 sugar binding {ECO:0000313|EMBL:ACB75560.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_220752_20
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(36263..37099)
DNA (837bp) protein (279aa)
Haloacid dehalogenase-like hydrolase, putative n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMQ9_9BACT
Haloacid dehalogenase-like hydrolase, putative {ECO:0000313|EMBL:EDY82019.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
HAD-superfamily hydrolase
berkeley_reactor_200306_planktonic_scaffold_220752_21
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37169..38077
DNA (909bp) protein (303aa)
LysR family transcriptional regulator n=2 Tax=Burkholderia RepID=I5CU35_9BURK
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EUC14064.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. BT03.;"
LysR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_220752_22
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38148..41177)
DNA (3030bp) protein (1010aa)
Cadherin id=4395010 bin=GWF2_Planctomycete_41_51 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
polymorphic membrane protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
berkeley_reactor_200306_planktonic_scaffold_220752_23
Moorea producens, Moorea, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(41697..42161)
DNA (465bp) protein (155aa)
MEKHLA domain protein n=1 Tax=Moorea producens 3L RepID=F4XPW2_9CYAN
MEKHLA domain protein {ECO:0000313|EMBL:EGJ33329.1}; TaxID=489825 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Moorea.;" source="Moorea producens 3L.;"
MEKHLA domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_220752_24
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(42168..43322)
DNA (1155bp) protein (385aa)
Iron-containing alcohol dehydrogenase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPD9_OPITP
iron-containing alcohol dehydrogenase
Iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:ACB73544.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_220752_25
unknown

Not on your lists

comp(43319..43819)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174585F
berkeley_reactor_200306_planktonic_scaffold_220752_26
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(43830..44135)
DNA (306bp) protein (102aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPD8_OPITP
antibiotic biosynthesis monooxygenase
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:ACB73543.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_220752_27
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

44245..45132
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPP1_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB75494.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_220752_28
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(45402..45908)
DNA (507bp) protein (169aa)
4-carboxymuconolactone decarboxylase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TTM1_METAC
pcaC; 4-carboxymuconolactone decarboxylase
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:AAM03857.1}; TaxID=188937 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /; C2A).;"
berkeley_reactor_200306_planktonic_scaffold_220752_29
Nostoc punctiforme, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(45944..46195)
DNA (252bp) protein (84aa)
Carboxymuconolactone decarboxylase n=1 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2J885_NOSP7
carboxymuconolactone decarboxylase
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:ACC79334.1}; TaxID=63737 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc punctiforme (strain ATCC 29133 / PCC 73102).;"
berkeley_reactor_200306_planktonic_scaffold_220752_30
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(46236..46832)
DNA (597bp) protein (199aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Geobacter sp. (strain M18) RepID=E8WN90_GEOS8
NAD-dependent epimerase/dehydratase
Tax=GWC2_Nitrospirae_57_9_curated
Displaying items 1-30 of 373 in total

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