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berkeley_reactor_200306_planktonic_scaffold_190120_26

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(32633..34978)

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.4
  • Coverage: 755.0
  • Bit_score: 968
  • Evalue 4.20e-279
ribonuclease R (EC:3.1.13.1) similarity KEGG
DB: KEGG
  • Identity: 39.5
  • Coverage: 744.0
  • Bit_score: 501
  • Evalue 2.30e-139
Ribonuclease R n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XG02_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 65.4
  • Coverage: 755.0
  • Bit_score: 968
  • Evalue 3.00e-279

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 2346
ATGCAAGACCAAATCCTCCGCACGCTCGAGCAAAAGAACTACGTTCCGATGAGCCCGGAAAACCTGATGCGCCATCTGCGCGTGCCGCCGGAGCAGGCACCGGAGTTCCAGCGGGTGCTGCACAAACTCGAACGCAATGGCGAGGTGGCGCGGATCAAGGGCACCCGCCTGGTGCGCACCCGCGACGCCGACTTGATTCCCGGCCGCATCCGGATGAACCGTGCGGGCAAGGGCTTTTTGCAGCCGGACGATCCCGCGCTCGGGGAAATCGCCGTGCCCGAAAGCGCCACCGGCACGGCGTTGCACGAGGACCGCGTGCTGGTGCGGCGCGATGTGCGCCGGCAACCGGCGCGCGAGGGCGGACCGGCCACCGGCACCGTGGTCCGCATTCTGGAACGTCACCGCACGCAGATCGTCGGCACCCTGCAACGCGGCCGGCAGTTTCTCTACGTGATCCCGGATGATCCGCGCATACCGCACGATATTTTTGTGCCGCCGCCGCGCGATGTGGGCCGGCCCGCGCACCCGGGCGACAAGGTGGTGGTGGAATTGGGCGCCTGGACCTCGCGCCACACCAATCCCGAAGGCGAAATCGTCGAAGTGCTTGGCGCGCCGGACGAGGAGGGCGTGGACATGCTTTCCGTGCTGCGCCAATACAATCTGCCACTGCATTTTCCCAAGCCCGTTCTGCACGAAGCGCACGCCGTCGGCTCGACCGTTCATCCGCGCGACCTCGCGGACCGGCTCGATTGCCGCGTCCACAATGTCATCACGATTGATCCCGATGACGCGAAAGATTTTGACGACGCCATCTGCCTGGAACGCGTCGGGGCCGACCGCTGGCGGCTGTGGGTTCACATCGCCGACGTGTCGCATTACGTCAGGCCCGGCTCCGCACTCGACGCCGAGGCGCGCAAGCGCGGCAACTCCACCTACCTCGTGGACCGCGTCATTCCGATGCTGCCGGAGGCGTTGAGCAACGAACTCTGCTCGCTCAAGCCCAACGTGGATCGCCTGACCAAATGCGTGGAATTCCTCATCGCGCACGATGGCCGGGTGCTGCATACCCGCTTTCATTCCGCGGTCATTCATTCGCAACGCCGGTTCACCTACGGCCAGGTGCTGGAAATGTTGCAGCGCGCGCCGGACAACGATCCCATTGAGCGCATGCTGCATCAGGCGCATGAACTGGCGCAAAAAATCCGGCGTCACCGCTTCAAAAACGGCTCGCTGGACCTGGACTTTCCCGAAACCAAAATCCGATTGGACGCCCAGGGCAAGGTGCTGCGCATCGAGAAGAACGAAAACGACGTTTCCCATCAGTTGATCGAGGAATTCATGCTGCTCGCCAACGAAGCGGTGGCCGCGCGTTTGATGAGTTTGCGCACGCCGGCCATTTACCGGGTTCACGAGGAGCCGGACGCCAAACGCCTCCAGGAATACCGCCAGGAAGTGCTGGCGCACCACGTTCCCTGCGGCAACCTGAGCCAGCCGGCCGAGGTGCAGAAACTGATGCAGAAACTCGGCGCCCTGCCGATTGGCCCGGCGCTGAAGATCGGGTTTCTCAAGTCGCTCATGCGGGCGGTGTATTCCGTCGAGCCGCTGGGCCACTACGGACTGGCCAAGAAAAAATACGCGCACTTCACCTCGCCCATCCGGCGCTACGCCGATCTCGTGGTGCATCGCGCGTTGTTCGACAAAAACGCGGTCAACGGCGCGGCGCTCAAGGAAATCGCGGAACATATTTCCCTGACGGAACGCAACTCCGCCGATGCCGAGCGCGACAGCAAGGATGTGAAACTGTTCGCCTTCCTCAAGGCGCAGCTCGCTGCCGGCAATCCCCAGGCGTATCCCGCCCTCGTCACGGACATCCGCAACTTCGGCTTCTTTGTGGACGTGCCGGATCTGGCCATGAGCGGGCTGGTGCCGTTGTCCACGATCGAGGATGACTTTTTTGTCCTCGACGACGTGCGCCGTCATCTCATCGGCCGCCGCACCCGGCGGATCATTCGCCTGGGCGACAAGCTCACCGTGCAGGTGGCGAAGGTGGACAGCTTTAAAAAACAGGTGGATTTCCGTCTCGCCCGCGCCGAACGGGTTTCTCCCCGGCAGGCCGGTTCGCGCAAAGGATTCGGGCGTCGTCCAGAAACGAAGCCGCGCGATCCAAAACCCTCATTGGCCTGGCCCGAAAGAAAAAAGCCGGAGCGTCCGTTTCAGAAGACCAACGAACGCCGCTTCCATTCCGAACGGCGACCGGGAAAATCATCCCAACCGCAATTCCAGACCACCAAGCGGCCGCTGATCAAATCGAGCCGGCCAGATCAAGCCAGACAACGTCGCCGGTGA
PROTEIN sequence
Length: 782
MQDQILRTLEQKNYVPMSPENLMRHLRVPPEQAPEFQRVLHKLERNGEVARIKGTRLVRTRDADLIPGRIRMNRAGKGFLQPDDPALGEIAVPESATGTALHEDRVLVRRDVRRQPAREGGPATGTVVRILERHRTQIVGTLQRGRQFLYVIPDDPRIPHDIFVPPPRDVGRPAHPGDKVVVELGAWTSRHTNPEGEIVEVLGAPDEEGVDMLSVLRQYNLPLHFPKPVLHEAHAVGSTVHPRDLADRLDCRVHNVITIDPDDAKDFDDAICLERVGADRWRLWVHIADVSHYVRPGSALDAEARKRGNSTYLVDRVIPMLPEALSNELCSLKPNVDRLTKCVEFLIAHDGRVLHTRFHSAVIHSQRRFTYGQVLEMLQRAPDNDPIERMLHQAHELAQKIRRHRFKNGSLDLDFPETKIRLDAQGKVLRIEKNENDVSHQLIEEFMLLANEAVAARLMSLRTPAIYRVHEEPDAKRLQEYRQEVLAHHVPCGNLSQPAEVQKLMQKLGALPIGPALKIGFLKSLMRAVYSVEPLGHYGLAKKKYAHFTSPIRRYADLVVHRALFDKNAVNGAALKEIAEHISLTERNSADAERDSKDVKLFAFLKAQLAAGNPQAYPALVTDIRNFGFFVDVPDLAMSGLVPLSTIEDDFFVLDDVRRHLIGRRTRRIIRLGDKLTVQVAKVDSFKKQVDFRLARAERVSPRQAGSRKGFGRRPETKPRDPKPSLAWPERKKPERPFQKTNERRFHSERRPGKSSQPQFQTTKRPLIKSSRPDQARQRRR*