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berkeley_reactor_200306_planktonic_scaffold_190120

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Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_190120_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

226..900
DNA (675bp) protein (225aa)
Sel1 domain protein repeat-containing protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDI4_9BACT
Sel1 domain protein repeat-containing protein {ECO:0000313|EMBL:EEF62130.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_190120_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(901..1956)
DNA (1056bp) protein (352aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJL1_9BACT
berkeley_reactor_200306_planktonic_scaffold_190120_3
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2101..3318
DNA (1218bp) protein (406aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7Y1_9BACT
secretion protein HlyD
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_190120_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

3343..4104
DNA (762bp) protein (254aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJL4_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF59890.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
macrolide ABC transporter ATP-binding protein
berkeley_reactor_200306_planktonic_scaffold_190120_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

4101..5318
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJL5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59891.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
multidrug ABC transporter substrate-binding protein
berkeley_reactor_200306_planktonic_scaffold_190120_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

5431..6444
DNA (1014bp) protein (338aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJL9_9BACT
translation factor SUA5
berkeley_reactor_200306_planktonic_scaffold_190120_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(6445..8256)
DNA (1812bp) protein (604aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR30_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57726.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_190120_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(8268..9626)
DNA (1359bp) protein (453aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR31_9BACT
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:EEF57727.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
atoC; DNA-binding response regulator, NtrC family (contains REC, AAA-type ATPase, and DNA-binding Fis domains)
berkeley_reactor_200306_planktonic_scaffold_190120_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(9755..10993)
DNA (1239bp) protein (413aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Signal transduction histidine kinase, nitrogen specific, NtrB n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR32_9BACT
ntrB; Signal transduction histidine kinase with PAS domain
berkeley_reactor_200306_planktonic_scaffold_190120_10
unknown

Not on your lists

comp(11192..11623)
DNA (432bp) protein (144aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_190120_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

11669..12814
DNA (1146bp) protein (382aa)
UBA/THIF-type NAD/FAD binding protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJR7_9BACT
UBA/THIF-type NAD/FAD binding protein {ECO:0000313|EMBL:EEF59943.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2
berkeley_reactor_200306_planktonic_scaffold_190120_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(12808..13497)
DNA (690bp) protein (230aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XI61_9BACT
berkeley_reactor_200306_planktonic_scaffold_190120_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(13503..14132)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XI62_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60555.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_190120_14
Desulfobacca acetoxidans, Desulfobacca, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14748..15191
DNA (444bp) protein (148aa)
Zn-dependent hydrolase n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NJA7_DESAR
Zn-dependent hydrolase
Zn-dependent hydrolase {ECO:0000313|EMBL:AEB09279.1}; TaxID=880072 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfobacca.;" source="Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2).;"
berkeley_reactor_200306_planktonic_scaffold_190120_15
unknown

Not on your lists

15508..16062
DNA (555bp) protein (185aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_190120_16
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

16076..16984
DNA (909bp) protein (303aa)
Geranylgeranyl pyrophosphate synthase n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZMI1_TERRK
geranylgeranyl pyrophosphate synthase
Geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:AFL90449.1}; Flags: Precursor;; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
berkeley_reactor_200306_planktonic_scaffold_190120_17
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

16995..18110
DNA (1116bp) protein (372aa)
ABC transporter, permease protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F2Y2_ACIC5
ABC transporter permease
ABC transporter, permease protein {ECO:0000313|EMBL:ACO33193.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
berkeley_reactor_200306_planktonic_scaffold_190120_18
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

18107..18802
DNA (696bp) protein (232aa)
ABC-type antimicrobial peptide transport system, ATPase component n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZMI3_TERRK
antimicrobial peptide ABC transporter ATPase
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:AFL90451.1}; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
berkeley_reactor_200306_planktonic_scaffold_190120_19
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

18819..20411
DNA (1593bp) protein (531aa)
Uncharacterized protein n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZMI4_TERRK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL90452.1}; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
berkeley_reactor_200306_planktonic_scaffold_190120_20

Not on your lists

20408..20839
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PXC8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBH99587.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_190120_21

Not on your lists

20836..22752
DNA (1917bp) protein (639aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PXC7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBH99586.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Cbb3-type cytochrome oxidase, cytochrome c subunit
berkeley_reactor_200306_planktonic_scaffold_190120_22
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22749..23417
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI0003765DF5
cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator
Two-component system, OmpR family, copper resistance phosphate regulon response regulator {ECO:0000313|EMBL:BAL27202.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
berkeley_reactor_200306_planktonic_scaffold_190120_23
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

23430..24794
DNA (1365bp) protein (455aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYX7_9BACT
integral membrane sensor signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_190120_24
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

25007..29206
DNA (4200bp) protein (1400aa)
ATP-dependent helicase HrpA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XB07_9BACT
ATP-dependent helicase HrpA {ECO:0000313|EMBL:EEF63192.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ATP-dependent helicase
berkeley_reactor_200306_planktonic_scaffold_190120_25
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

29335..32481
DNA (3147bp) protein (1049aa)
Alpha-glucosidase {ECO:0000313|EMBL:EEF63024.1}; EC=3.2.1.20 {ECO:0000313|EMBL:EEF63024.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Alpha-glucosidase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAI9_9BACT
glycoside hydrolase
berkeley_reactor_200306_planktonic_scaffold_190120_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(32633..34978)
DNA (2346bp) protein (782aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ribonuclease R (EC:3.1.13.1)
Ribonuclease R n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XG02_9BACT
berkeley_reactor_200306_planktonic_scaffold_190120_27
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

35178..36956
DNA (1779bp) protein (593aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCX4_9BACT
berkeley_reactor_200306_planktonic_scaffold_190120_28
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(37182..37745)
DNA (564bp) protein (188aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKF5_9BACT
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:EEF59625.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
HAD-superfamily hydrolase
berkeley_reactor_200306_planktonic_scaffold_190120_29
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(37812..38885)
DNA (1074bp) protein (358aa)
Peptide chain release factor 1 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKF6_9BACT
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
peptide chain release factor 1
berkeley_reactor_200306_planktonic_scaffold_190120_30
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(39032..39277)
DNA (246bp) protein (82aa)
50S ribosomal protein L31 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKF7_9BACT
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
50S ribosomal protein L31
Displaying items 1-30 of 73 in total

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