name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_planktonic_scaffold_90435_1
unknown
|
Not on your lists |
727..867
|
This feature has no annotations |
|
berkeley_reactor_200306_planktonic_scaffold_90435_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(842..2197)
|
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Isocitrate dehydrogenase [NADP] n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PM90_CHIPD
isocitrate dehydrogenase
|
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berkeley_reactor_200306_planktonic_scaffold_90435_3
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
2361..3314
|
Mammalian cell entry related domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PH47_CHIPD
organic solvent ABC transporter perimplasmic protein
Mammalian cell entry related domain protein {ECO:0000313|EMBL:ACU63598.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
|
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berkeley_reactor_200306_planktonic_scaffold_90435_4
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(3520..3774)
|
cold-shock protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036BAB1B
Cold-shock DNA-binding domain-containing protein {ECO:0000313|EMBL:KGE13043.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
cold-shock DNA-binding domain-containing protein
|
|
berkeley_reactor_200306_planktonic_scaffold_90435_5
candidate division TM7 genomosp. GTL1, Candidatus Saccharibacteria, Bacteria
|
Not on your lists |
comp(4036..5613)
|
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=443342 species="Bacteria; Candidatus Saccharibacteria.;" source="candidate division TM7 genomosp. GTL1.;"
F0F1 ATP synthase subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KT85_9BACT
|
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berkeley_reactor_200306_planktonic_scaffold_90435_6
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(5672..6235)
|
ATP synthase subunit delta n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PP33_CHIPD
ATP synthase F1 subunit delta
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
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berkeley_reactor_200306_planktonic_scaffold_90435_7
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(6319..6813)
|
ATP synthase subunit b n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP08_NIAKG
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
ATP synthase F0 subcomplex subunit B
|
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berkeley_reactor_200306_planktonic_scaffold_90435_8
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria
|
Not on your lists |
comp(6919..7164)
|
ATP synthase F0, C subunit n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PP31_CHIPD
ATP synthase F0 subunit C
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
|
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berkeley_reactor_200306_planktonic_scaffold_90435_9
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(7222..8457)
|
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037BDA96
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
ATP synthase F0 subunit A
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berkeley_reactor_200306_planktonic_scaffold_90435_10
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria
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Not on your lists |
8552..8914
|
Acyl carrier protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JQS3_9BACT
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
phosphopantetheine-binding protein
|
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berkeley_reactor_200306_planktonic_scaffold_90435_11
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
8918..9823
|
Lipid A biosynthesis acyltransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAY1_CHIPD
lipid A biosynthesis acyltransferase
Lipid A biosynthesis acyltransferase {ECO:0000313|EMBL:ACU59353.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
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berkeley_reactor_200306_planktonic_scaffold_90435_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
9836..10228
|
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000365DF57
hydroxymyristoyl-ACP dehydratase
Hydroxymyristoyl-ACP dehydratase {ECO:0000313|EMBL:AHF15908.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
|
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berkeley_reactor_200306_planktonic_scaffold_90435_13
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria
|
Not on your lists |
10269..10880
|
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAY3_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:GAL82964.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
hypothetical protein
|
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berkeley_reactor_200306_planktonic_scaffold_90435_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
10971..12110
|
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003731777
Uncharacterized protein {ECO:0000313|EMBL:KIC95147.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
beta-ketoacyl synthase
|
|
berkeley_reactor_200306_planktonic_scaffold_90435_15
Flavobacterium sp. MEB061, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
12170..12865
|
Uncharacterized protein n=1 Tax=Winogradskyella psychrotolerans RS-3 RepID=S7VXA5_9FLAO
Contig_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ19933.1}; TaxID=1587524 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. MEB061.;"
hypothetical protein
|
|
berkeley_reactor_200306_planktonic_scaffold_90435_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
12872..13555
|
NAD-dependent protein deacylase {ECO:0000256|HAMAP-Rule:MF_01121}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01121};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01121}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
NAD-dependent protein deacylase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFH8_NIAKG
NAD-dependent deacetylase
|
|
berkeley_reactor_200306_planktonic_scaffold_90435_17
unknown
|
Not on your lists |
comp(13399..13734)
|
This feature has no annotations |
|
berkeley_reactor_200306_planktonic_scaffold_90435_18
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
14278..15258
|
Kef-type K+ transport system, putative NAD-binding component n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SK63_9FLAO
Kef-type K+ transport system, putative NAD-binding component {ECO:0000313|EMBL:ESU26991.1}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
irk; potassium channel Irk
|
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berkeley_reactor_200306_planktonic_scaffold_90435_19
Barnesiella viscericola, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(15255..15857)
|
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=880074 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella viscericola DSM 18177.;"
Ribonuclease HII n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I9PMR4_9BACE
ribonuclease HII
|
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berkeley_reactor_200306_planktonic_scaffold_90435_20
unknown
|
Not on your lists |
15892..17016
|
This feature has no annotations |
|
berkeley_reactor_200306_planktonic_scaffold_90435_21
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(17035..17547)
|
Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:ACU63461.1}; EC=1.8.4.12 {ECO:0000313|EMBL:ACU63461.1};; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Methionine-R-sulfoxide reductase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PFP9_CHIPD
methionine-R-sulfoxide reductase
|
|
berkeley_reactor_200306_planktonic_scaffold_90435_22
Porphyromonas asaccharolytica, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria
|
Not on your lists |
17615..18337
|
Outer membrane insertion C-terminal signal n=1 Tax=Porphyromonas asaccharolytica (strain ATCC 25260 / DSM 20707 / VPI 4198) RepID=F4KMT7_PORAD
outer membrane insertion C-terminal signal
Outer membrane insertion C-terminal signal {ECO:0000313|EMBL:AEE12338.1}; TaxID=879243 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas asaccharolytica (strain ATCC 25260 / DSM 20707 / VPI; 4198) (Bacteroides asaccharolyticus).;"
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berkeley_reactor_200306_planktonic_scaffold_90435_23
unknown
|
Not on your lists |
18434..19141
|
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PK22_CHIPD
hypothetical protein
|
|
berkeley_reactor_200306_planktonic_scaffold_90435_24
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria
|
Not on your lists |
19334..20029
|
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI00036DCD9D
Uncharacterized protein {ECO:0000313|EMBL:GAO31130.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
|
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berkeley_reactor_200306_planktonic_scaffold_90435_25
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
20190..21251
|
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035D1B34
Cytochrome C oxidase assembly protein {ECO:0000313|EMBL:KIC91155.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
cytochrome oxidase assembly
|
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berkeley_reactor_200306_planktonic_scaffold_90435_26
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(21257..21907)
|
LuxR family transcriptional regulator n=1 Tax=Cytophagales str. B6 RepID=UPI0003B70D71
LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ACU62905.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
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berkeley_reactor_200306_planktonic_scaffold_90435_27
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(21921..22703)
|
Putative signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAZ5_NIAKG
Histidine kinase {ECO:0000313|EMBL:KIC89384.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
putative signal transduction histidine kinase
|
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berkeley_reactor_200306_planktonic_scaffold_90435_28
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(22700..23317)
|
Membrane protein, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZYF2_9BACT
Membrane protein, putative {ECO:0000313|EMBL:EAY24625.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
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berkeley_reactor_200306_planktonic_scaffold_90435_29
unknown
|
Not on your lists |
comp(23321..23890)
|
This feature has no annotations |
|
berkeley_reactor_200306_planktonic_scaffold_90435_30
GWA2_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24291..24827
|
UPI0003D036C4 related cluster n=1 Tax=unknown RepID=UPI0003D036C4
Tax=GWA2_Deltaproteobacteria_47_9_curated
|