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berkeley_reactor_200306_planktonic_scaffold_90435

Search features with annotation key words

Displaying items 1-30 of 94 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_90435_1
unknown

Not on your lists

727..867
DNA (141bp) protein (47aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_90435_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(842..2197)
DNA (1356bp) protein (452aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Isocitrate dehydrogenase [NADP] n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PM90_CHIPD
isocitrate dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_90435_3
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2361..3314
DNA (954bp) protein (318aa)
Mammalian cell entry related domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PH47_CHIPD
organic solvent ABC transporter perimplasmic protein
Mammalian cell entry related domain protein {ECO:0000313|EMBL:ACU63598.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_90435_4
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3520..3774)
DNA (255bp) protein (85aa)
cold-shock protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036BAB1B
Cold-shock DNA-binding domain-containing protein {ECO:0000313|EMBL:KGE13043.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
cold-shock DNA-binding domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_90435_5
candidate division TM7 genomosp. GTL1, Candidatus Saccharibacteria, Bacteria

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comp(4036..5613)
DNA (1578bp) protein (526aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=443342 species="Bacteria; Candidatus Saccharibacteria.;" source="candidate division TM7 genomosp. GTL1.;"
F0F1 ATP synthase subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KT85_9BACT
berkeley_reactor_200306_planktonic_scaffold_90435_6
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5672..6235)
DNA (564bp) protein (188aa)
ATP synthase subunit delta n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PP33_CHIPD
ATP synthase F1 subunit delta
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_90435_7
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6319..6813)
DNA (495bp) protein (165aa)
ATP synthase subunit b n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP08_NIAKG
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
ATP synthase F0 subcomplex subunit B
berkeley_reactor_200306_planktonic_scaffold_90435_8
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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comp(6919..7164)
DNA (246bp) protein (82aa)
ATP synthase F0, C subunit n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PP31_CHIPD
ATP synthase F0 subunit C
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_planktonic_scaffold_90435_9
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(7222..8457)
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037BDA96
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
ATP synthase F0 subunit A
berkeley_reactor_200306_planktonic_scaffold_90435_10
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8552..8914
DNA (363bp) protein (121aa)
Acyl carrier protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JQS3_9BACT
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
phosphopantetheine-binding protein
berkeley_reactor_200306_planktonic_scaffold_90435_11
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8918..9823
DNA (906bp) protein (302aa)
Lipid A biosynthesis acyltransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAY1_CHIPD
lipid A biosynthesis acyltransferase
Lipid A biosynthesis acyltransferase {ECO:0000313|EMBL:ACU59353.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_90435_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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9836..10228
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000365DF57
hydroxymyristoyl-ACP dehydratase
Hydroxymyristoyl-ACP dehydratase {ECO:0000313|EMBL:AHF15908.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_90435_13
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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10269..10880
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAY3_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:GAL82964.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_90435_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10971..12110
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003731777
Uncharacterized protein {ECO:0000313|EMBL:KIC95147.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
beta-ketoacyl synthase
berkeley_reactor_200306_planktonic_scaffold_90435_15
Flavobacterium sp. MEB061, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12170..12865
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Winogradskyella psychrotolerans RS-3 RepID=S7VXA5_9FLAO
Contig_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ19933.1}; TaxID=1587524 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. MEB061.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_90435_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12872..13555
DNA (684bp) protein (228aa)
NAD-dependent protein deacylase {ECO:0000256|HAMAP-Rule:MF_01121}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01121};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01121}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
NAD-dependent protein deacylase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFH8_NIAKG
NAD-dependent deacetylase
berkeley_reactor_200306_planktonic_scaffold_90435_17
unknown

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comp(13399..13734)
DNA (336bp) protein (112aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_90435_18
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

14278..15258
DNA (981bp) protein (327aa)
Kef-type K+ transport system, putative NAD-binding component n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SK63_9FLAO
Kef-type K+ transport system, putative NAD-binding component {ECO:0000313|EMBL:ESU26991.1}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
irk; potassium channel Irk
berkeley_reactor_200306_planktonic_scaffold_90435_19
Barnesiella viscericola, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(15255..15857)
DNA (603bp) protein (201aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=880074 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella viscericola DSM 18177.;"
Ribonuclease HII n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I9PMR4_9BACE
ribonuclease HII
berkeley_reactor_200306_planktonic_scaffold_90435_20
unknown

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15892..17016
DNA (1125bp) protein (375aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_90435_21
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17035..17547)
DNA (513bp) protein (171aa)
Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:ACU63461.1}; EC=1.8.4.12 {ECO:0000313|EMBL:ACU63461.1};; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Methionine-R-sulfoxide reductase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PFP9_CHIPD
methionine-R-sulfoxide reductase
berkeley_reactor_200306_planktonic_scaffold_90435_22
Porphyromonas asaccharolytica, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17615..18337
DNA (723bp) protein (241aa)
Outer membrane insertion C-terminal signal n=1 Tax=Porphyromonas asaccharolytica (strain ATCC 25260 / DSM 20707 / VPI 4198) RepID=F4KMT7_PORAD
outer membrane insertion C-terminal signal
Outer membrane insertion C-terminal signal {ECO:0000313|EMBL:AEE12338.1}; TaxID=879243 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas asaccharolytica (strain ATCC 25260 / DSM 20707 / VPI; 4198) (Bacteroides asaccharolyticus).;"
berkeley_reactor_200306_planktonic_scaffold_90435_23
unknown

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18434..19141
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PK22_CHIPD
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_90435_24
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19334..20029
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI00036DCD9D
Uncharacterized protein {ECO:0000313|EMBL:GAO31130.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
berkeley_reactor_200306_planktonic_scaffold_90435_25
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20190..21251
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035D1B34
Cytochrome C oxidase assembly protein {ECO:0000313|EMBL:KIC91155.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
cytochrome oxidase assembly
berkeley_reactor_200306_planktonic_scaffold_90435_26
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21257..21907)
DNA (651bp) protein (217aa)
LuxR family transcriptional regulator n=1 Tax=Cytophagales str. B6 RepID=UPI0003B70D71
LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ACU62905.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_90435_27
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21921..22703)
DNA (783bp) protein (261aa)
Putative signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAZ5_NIAKG
Histidine kinase {ECO:0000313|EMBL:KIC89384.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
putative signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_90435_28
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(22700..23317)
DNA (618bp) protein (206aa)
Membrane protein, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZYF2_9BACT
Membrane protein, putative {ECO:0000313|EMBL:EAY24625.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
berkeley_reactor_200306_planktonic_scaffold_90435_29
unknown

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comp(23321..23890)
DNA (570bp) protein (190aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_90435_30
GWA2_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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24291..24827
DNA (537bp) protein (179aa)
UPI0003D036C4 related cluster n=1 Tax=unknown RepID=UPI0003D036C4
Tax=GWA2_Deltaproteobacteria_47_9_curated
Displaying items 1-30 of 94 in total

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