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berkeley_reactor_200306_planktonic_scaffold_82142_6

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: 9340..9882

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Pontibacter sp. BAB1700 RepID=J0VBD7_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 51.4
  • Coverage: 175.0
  • Bit_score: 162
  • Evalue 2.70e-37
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:EJF11622.1}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 51.4
  • Coverage: 175.0
  • Bit_score: 162
  • Evalue 3.70e-37
RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 45.7
  • Coverage: 173.0
  • Bit_score: 157
  • Evalue 1.90e-36

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Taxonomy

Pontibacter sp. BAB1700 → Pontibacter → Cytophagales → Cytophagia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 543
ATGACCGAAACCGCGTTAATCGAAGCCTGCAAAAGACGGGAGTCATTTGCACAGCGGTTATTGTATGACCGGTTCGTAGACAAAATGTATGTGCTTTGCCTGAGGTATATCGTCAACCAGACCGATGCGGAAGAGGTACTTTCCGATGCTTTCTTTAAATTTTTCCGCAATATCGACCAGTTTACCTATATCCGGGAAGGCAGCGTACAGGCCTGGTTAAGTAAAATAGTCGTCAACGAATGCCTGATGTTTCTGAGAAAGAAGAAACAATTGGTGCTTACAATAGATGACCCTATTACCCATGCCGGGCTTACAGAAAACGATACCGTATTGCAACAGATGGAAAGCAGGGACATACTACGCCATATCCAGGAGATGCCCGCGGGTTACCGTACCGTACTGAACCTCTATGTATTCGAAGACAAAAGCCATAAAGAGATTGCCGCCCTGCTGCAGATATCGGAAAGCACTTCGAAATCGCAGTTGTTCAAAGCCAGGGCCCTACTCCGGCAGCGCATCGCGGAGGTACACCCCAACGATTAA
PROTEIN sequence
Length: 181
MTETALIEACKRRESFAQRLLYDRFVDKMYVLCLRYIVNQTDAEEVLSDAFFKFFRNIDQFTYIREGSVQAWLSKIVVNECLMFLRKKKQLVLTIDDPITHAGLTENDTVLQQMESRDILRHIQEMPAGYRTVLNLYVFEDKSHKEIAALLQISESTSKSQLFKARALLRQRIAEVHPND*