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berkeley_reactor_200306_planktonic_scaffold_82142

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_82142_1
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(725..1324)
DNA (600bp) protein (200aa)
Appr-1-p processing domain protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KR62_HALH1
Appr-1-p processing protein
Appr-1-p processing domain protein {ECO:0000313|EMBL:AEE54249.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
berkeley_reactor_200306_planktonic_scaffold_82142_2
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1496..5155)
DNA (3660bp) protein (1220aa)
Acriflavin resistance protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNV2_NIAKG
Copper transporter {ECO:0000313|EMBL:KIC96044.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
acriflavin resistance protein
berkeley_reactor_200306_planktonic_scaffold_82142_3
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5244..6440)
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036DAAE2
Putative RND-type efflux pump membrane fusion protein {ECO:0000313|EMBL:GAO41854.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_82142_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6481..7827)
DNA (1347bp) protein (449aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000381971F
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:AEW02039.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_82142_5
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7851..8372)
DNA (522bp) protein (174aa)
Regulatory protein MarR n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C3W1_SPHS2
regulatory protein MarR
Regulatory protein MarR {ECO:0000313|EMBL:ADZ79571.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
berkeley_reactor_200306_planktonic_scaffold_82142_6
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

9340..9882
DNA (543bp) protein (181aa)
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Pontibacter sp. BAB1700 RepID=J0VBD7_9BACT
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:EJF11622.1}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
RNA polymerase sigma-70 factor
berkeley_reactor_200306_planktonic_scaffold_82142_7
unknown

Not on your lists

9912..10592
DNA (681bp) protein (227aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_82142_8
unknown

Not on your lists

10611..11765
DNA (1155bp) protein (385aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_82142_9
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11785..12402)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KT24_SOLCM
Uncharacterized protein {ECO:0000313|EMBL:KIA91975.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_82142_10
unknown

Not on your lists

12515..12736
DNA (222bp) protein (74aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_82142_11
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12785..14236)
DNA (1452bp) protein (484aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PCG8_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU59551.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_82142_12
unknown

Not on your lists

14517..14735
DNA (219bp) protein (73aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_82142_13
unknown

Not on your lists

14891..15316
DNA (426bp) protein (142aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_82142_14
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15523..16533)
DNA (1011bp) protein (337aa)
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PV36_CHIPD
alcohol dehydrogenase zinc-binding domain-containing protein
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ACU62945.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_82142_trna_3
unknown

Not on your lists

comp(16971..17044)
DNA (74bp)
transferRNA Arg
berkeley_reactor_200306_planktonic_scaffold_82142_trna_2
unknown

Not on your lists

comp(17216..17289)
DNA (74bp)
transferRNA Arg
berkeley_reactor_200306_planktonic_scaffold_82142_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17373..17846
DNA (474bp) protein (158aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9R6_NIAKG
ribosomal RNA large subunit methyltransferase H
berkeley_reactor_200306_planktonic_scaffold_82142_16
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18374..19711)
DNA (1338bp) protein (446aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EAQ9_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EDM37450.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_82142_17
unknown

Not on your lists

comp(19801..20343)
DNA (543bp) protein (181aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_82142_18
unknown

Not on your lists

20354..20728
DNA (375bp) protein (125aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_82142_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20567..21520)
DNA (954bp) protein (318aa)
ABC transporter related protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCU0_NIAKG
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:AEW03544.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_82142_20
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21652..23184
DNA (1533bp) protein (511aa)
Polysaccharide biosynthesis protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NTV2_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF17659.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_82142_21
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23428..24300)
DNA (873bp) protein (291aa)
Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PES7_CHIPD
Putative AraC family transcriptional regulator {ECO:0000313|EMBL:GAO41792.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
AraC family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_82142_22
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(24397..25095)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Kordia algicida OT-1 RepID=A9EB59_9FLAO
ErfK/YbiS/YcfS/YnhG family protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_planktonic_scaffold_82142_23
unknown

Not on your lists

comp(25347..25589)
DNA (243bp) protein (81aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_82142_24
unknown

Not on your lists

25603..26799
DNA (1197bp) protein (399aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_82142_25
GWF2_Lentisphaerae_45_14_curated, Lentisphaerae, Bacteria

Not on your lists

comp(26876..27601)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KP96_HALH1
hypothetical protein
Tax=GWF2_Lentisphaerae_45_14_curated
berkeley_reactor_200306_planktonic_scaffold_82142_26
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27942..28733
DNA (792bp) protein (264aa)
CDP-alcohol phosphatidyltransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PR90_CHIPD
CDP-alcohol phosphatidyltransferase
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:ACU64329.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_82142_27
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

28782..29036
DNA (255bp) protein (85aa)
Phosphoribosylformylglycinamidine synthase, purS n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PR89_CHIPD
phosphoribosylformylglycinamidine synthase subunit PurS
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
berkeley_reactor_200306_planktonic_scaffold_82142_28
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

29047..29757
DNA (711bp) protein (237aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GHV4_9BACT
yraL; methyltransferase
Displaying items 1-30 of 87 in total

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