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berkeley_reactor_200306_biofilm_scaffold_6881

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_6881_1
Amycolatopsis decaplanina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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75..3215
DNA (3141bp) protein (1047aa)
Putative WD-40 repeat protein n=1 Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2Z5C4_9PSEU
Putative WD-40 repeat protein {ECO:0000313|EMBL:EME55844.1}; TaxID=1284240 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis decaplanina DSM 44594.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_6881_2
unknown

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3345..3572
DNA (228bp) protein (76aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_6881_3
unknown

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3569..4663
DNA (1095bp) protein (365aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_6881_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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4841..6973
DNA (2133bp) protein (711aa)
Glucose/sorbosone dehydrogenase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D875_SINAD
glucose/sorbosone dehydrogenase
Glucose/sorbosone dehydrogenase {ECO:0000313|EMBL:AGA25422.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6881_5
Shewanella piezotolerans, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7567..13800
DNA (6234bp) protein (2078aa)
Hemolysin-type calcium-binding region n=1 Tax=Shewanella piezotolerans (strain WP3 / JCM 13877) RepID=B8CJS3_SHEPW
hemolysin-type calcium-binding region
Hemolysin-type calcium-binding region {ECO:0000313|EMBL:ACJ28170.1}; TaxID=225849 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella piezotolerans (strain WP3 / JCM 13877).;"
berkeley_reactor_200306_biofilm_scaffold_6881_6
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(13969..16317)
DNA (2349bp) protein (783aa)
Protein kinase family protein n=2 Tax=Singulisphaera acidiphila RepID=L0DC53_SINAD
protein kinase family protein
Protein kinase family protein {ECO:0000313|EMBL:AGA26435.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6881_7
RBG_13_Planctomycetes_63_9_curated, Planctomycetia, Planctomycetes, Bacteria

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comp(16314..16886)
DNA (573bp) protein (191aa)
RNA polymerase sigma factor n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C35E9
RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1
Tax=RBG_13_Planctomycetes_63_9_curated
berkeley_reactor_200306_biofilm_scaffold_6881_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(17063..18661)
DNA (1599bp) protein (533aa)
Oxidoreductase NAD-binding domain/FAD binding domain/Putative Fe-S cluster n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKX3_SINAD
Oxidoreductase NAD-binding domain/FAD binding domain/Putative Fe-S cluster
Oxidoreductase NAD-binding domain/FAD binding domain/Putative Fe-S cluster {ECO:0000313|EMBL:AGA29882.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6881_9
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(18678..20558)
DNA (1881bp) protein (627aa)
Precorrin-3B synthase n=2 Tax=Singulisphaera acidiphila RepID=L0DMK0_SINAD
precorrin-3B synthase
Precorrin-3B synthase {ECO:0000313|EMBL:AGA29881.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6881_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(20644..22005)
DNA (1362bp) protein (454aa)
Nitrate/nitrite transporter n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DM52_SINAD
nitrate/nitrite transporter
Nitrate/nitrite transporter {ECO:0000313|EMBL:AGA29880.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6881_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(22083..23162)
DNA (1080bp) protein (360aa)
Putative anaerobic dehydrogenase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKJ2_SINAD
anaerobic dehydrogenase
Putative anaerobic dehydrogenase {ECO:0000313|EMBL:AGA29879.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6881_12
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

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23258..24358
DNA (1101bp) protein (367aa)
Tax=RBG_16_Spirochaete_67_19_curated
berkeley_reactor_200306_biofilm_scaffold_6881_13
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(24301..25899)
DNA (1599bp) protein (533aa)
Fe-S-cluster-containing hydrogenase subunit n=2 Tax=Singulisphaera acidiphila RepID=L0DM22_SINAD
Fe-S-cluster-containing hydrogenase subunit
Fe-S-cluster-containing hydrogenase subunit {ECO:0000313|EMBL:AGA29878.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6881_14
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(26335..26967)
DNA (633bp) protein (211aa)
Response regulator n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKW9_SINAD
response regulator
Response regulator {ECO:0000313|EMBL:AGA29877.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6881_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(26921..28492)
DNA (1572bp) protein (524aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Histidine kinase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DMJ5_SINAD
histidine kinase
berkeley_reactor_200306_biofilm_scaffold_6881_16
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(28511..29665)
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002ED6005
Beta-lactamase {ECO:0000313|EMBL:EDY21216.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
beta-lactamase
berkeley_reactor_200306_biofilm_scaffold_6881_17
CG_Arma_02, Armatimonadetes, Bacteria

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comp(29758..31896)
DNA (2139bp) protein (713aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R580_ISOPI
multi-sensor hybrid histidine kinase
Tax=CG_Arma_02
Displaying 17 items

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