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berkeley_reactor_200306_biofilm_scaffold_90404

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Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_90404_1
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2..751)
DNA (750bp) protein (250aa)
DnaJ-class molecular chaperone with C-terminal Zn finger domain n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DG48_SINAD
DnaJ-class molecular chaperone with C-terminal Zn finger domain
DnaJ-class molecular chaperone with C-terminal Zn finger domain {ECO:0000313|EMBL:AGA27788.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

1006..1497
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Singulisphaera acidiphila RepID=UPI000370160D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27789.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

1608..2774
DNA (1167bp) protein (389aa)
ATPase involved in chromosome partitioning n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DG14_SINAD
chromosome partitioning ATPase
ATPase involved in chromosome partitioning {ECO:0000313|EMBL:AGA27790.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2876..4438)
DNA (1563bp) protein (521aa)
N-acyl-D-aspartate/D-glutamate deacylase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DG73_SINAD
N-acyl-D-aspartate/D-glutamate deacylase
N-acyl-D-aspartate/D-glutamate deacylase {ECO:0000313|EMBL:AGA27850.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_5
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(4474..5136)
DNA (663bp) protein (221aa)
HhH-GPD family protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R1Q9_ISOPI
HhH-GPD family protein
HhH-GPD family protein {ECO:0000313|EMBL:ADV61331.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
berkeley_reactor_200306_biofilm_scaffold_90404_6
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(5220..6479)
DNA (1260bp) protein (420aa)
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DEQ1_SINAD
aspartate/tyrosine/aromatic aminotransferase
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:AGA27849.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_7
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(6502..7245)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGA4_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27848.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(7390..10569)
DNA (3180bp) protein (1060aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DG99_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27843.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_9
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(10756..11088)
DNA (333bp) protein (111aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGG4_SINAD
FKBP-type peptidyl-prolyl cis-trans isomerase
berkeley_reactor_200306_biofilm_scaffold_90404_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

11326..11763
DNA (438bp) protein (146aa)
Putative translation initiation inhibitor, yjgF family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DFZ1_SINAD
translation initiation inhibitor
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:AGA27770.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(11757..12245)
DNA (489bp) protein (163aa)
Cytochrome c, mono-and diheme variants family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DEG9_SINAD
cytochrome c, mono- and diheme variants family
Cytochrome c, mono-and diheme variants family {ECO:0000313|EMBL:AGA27769.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_12
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(12332..13279)
DNA (948bp) protein (316aa)
Hydroxypyruvate isomerase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DG32_SINAD
hydroxypyruvate isomerase
Hydroxypyruvate isomerase {ECO:0000313|EMBL:AGA27773.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(13298..14713)
DNA (1416bp) protein (472aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C51CE
Uncharacterized protein {ECO:0000313|EMBL:EDY16807.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_90404_14
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(14809..16140)
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQ92_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA31043.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_15
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

16391..19372
DNA (2982bp) protein (994aa)
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI00029A896E
Uncharacterized protein {ECO:0000313|EMBL:EDL61863.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
heme-binding domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_90404_16
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(19432..20604)
DNA (1173bp) protein (391aa)
6-phosphogluconolactonase n=1 Tax=Schlesneria paludicola RepID=UPI00029A961F
3-carboxymuconate cyclase
Tax=RBG_16_Planctomycetes_64_12_curated
berkeley_reactor_200306_biofilm_scaffold_90404_17
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(20753..21484)
DNA (732bp) protein (244aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] id=12557861 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:ABJ88299.1}; EC=1.1.1.100 {ECO:0000313|EMBL:ABJ88299.1};; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
berkeley_reactor_200306_biofilm_scaffold_90404_18
RBG_13_Actinobacteria_55_18_curated, Actinobacteria, Bacteria

Not on your lists

21696..22703
DNA (1008bp) protein (336aa)
glutaconate CoA-transferase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4C38
atoD; acyl CoA:acetate/3-ketoacid CoA transferase subunit alpha
Tax=RBG_13_Actinobacteria_55_18_curated
berkeley_reactor_200306_biofilm_scaffold_90404_19
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

Not on your lists

22707..23525
DNA (819bp) protein (273aa)
3-oxoacid CoA-transferase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C56A9
gctA3; glutaconate CoA-transferase subunit A GctA3
Tax=RBG_16_Chloroflexi_57_8_curated
berkeley_reactor_200306_biofilm_scaffold_90404_20
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(23534..23956)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNZ5_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA30381.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_21
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24285..25274
DNA (990bp) protein (330aa)
conserved hypothetical protein, membrane n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AE8F
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_47_11_curated
berkeley_reactor_200306_biofilm_scaffold_90404_trna_2
unknown

Not on your lists

comp(25627..25699)
DNA (73bp)
transferRNA Lys
berkeley_reactor_200306_biofilm_scaffold_90404_22
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(25876..27177)
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DHK8_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28742.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_23
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

27429..28196
DNA (768bp) protein (256aa)
Uncharacterized protein with conserved CXXC pairs n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIV1_SINAD
hypothetical protein
Uncharacterized protein with conserved CXXC pairs {ECO:0000313|EMBL:AGA28743.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_24
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(28232..29113)
DNA (882bp) protein (294aa)
2-polyprenylphenol hydroxylase-like oxidoreductase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DH94_SINAD
2-polyprenylphenol 6-hydroxylase
2-polyprenylphenol hydroxylase-like oxidoreductase {ECO:0000313|EMBL:AGA28744.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_25
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(29146..30744)
DNA (1599bp) protein (533aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
Pseudouridine synthase n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R0I7_ISOPI
pseudouridine synthase
berkeley_reactor_200306_biofilm_scaffold_90404_26
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(30994..31983)
DNA (990bp) protein (330aa)
Peptidylarginine deiminase-like enzyme n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DEV1_SINAD
peptidylarginine deiminase-like protein
Peptidylarginine deiminase-like enzyme {ECO:0000313|EMBL:AGA27797.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_27
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(32007..32900)
DNA (894bp) protein (298aa)
Putative amidohydrolase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DG59_SINAD
amidohydrolase
Putative amidohydrolase {ECO:0000313|EMBL:AGA27798.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_28
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

33183..33644
DNA (462bp) protein (154aa)
Putative translation initiation inhibitor, yjgF family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DEJ8_SINAD
translation initiation inhibitor
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:AGA27799.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_90404_29
unknown

Not on your lists

34133..34468
DNA (336bp) protein (112aa)

This feature has no annotations

Displaying items 1-30 of 36 in total

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