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berkeley_reactor_200306_biofilm_scaffold_89105

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_89105_1
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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264..1235
DNA (972bp) protein (324aa)
UV damage endonuclease UvdE n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIT9_SINAD
UV damage endonuclease UvdE
UV damage endonuclease UvdE {ECO:0000313|EMBL:AGA28765.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_89105_2
Neisseria sp. oral taxon 014, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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1235..1975
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Neisseria sp. oral taxon 014 str. F0314 RepID=D7N2S6_9NEIS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFI22738.1}; TaxID=641149 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria sp. oral taxon 014 str. F0314.;"
berkeley_reactor_200306_biofilm_scaffold_89105_3
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(1981..3015)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C2D3_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EDL61225.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
PKD domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_89105_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(3139..4653)
DNA (1515bp) protein (505aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Signal transduction histidine kinase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D7R0_SINAD
signal transduction histidine kinase
berkeley_reactor_200306_biofilm_scaffold_89105_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(4650..5417)
DNA (768bp) protein (256aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D8Y7_SINAD
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AGA25293.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_89105_6
unknown

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comp(5414..5644)
DNA (231bp) protein (77aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_89105_7
unknown

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comp(5704..5916)
DNA (213bp) protein (71aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_89105_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(6948..8126)
DNA (1179bp) protein (393aa)
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DCC8_SINAD
L-alanine-DL-glutamate epimerase-like protein
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:AGA27034.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_89105_9
Lentisphaera araneosa, Lentisphaera, Lentisphaerales, Lentisphaeria, Lentisphaerae, Bacteria

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comp(8166..9488)
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003792532
Glutamate-1-semialdehyde-2,1-aminomutase {ECO:0000313|EMBL:EDM27992.1}; TaxID=313628 species="Bacteria; Lentisphaerae; Lentisphaeria; Lentisphaerales; Lentisphaeraceae; Lentisphaera.;" source="Lentisphaera araneosa HTCC2155.;"
class III aminotransferase
berkeley_reactor_200306_biofilm_scaffold_89105_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(9558..10844)
DNA (1287bp) protein (429aa)
Neutral/alkaline non-lysosomal ceramidase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DEF4_SINAD
Neutral/alkaline non-lysosomal ceramidase
Neutral/alkaline non-lysosomal ceramidase {ECO:0000313|EMBL:AGA27036.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_89105_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(10950..12296)
DNA (1347bp) protein (449aa)
Sugar phosphate permease n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DCR7_SINAD
sugar phosphate permease
Sugar phosphate permease {ECO:0000313|EMBL:AGA27037.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying 11 items

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