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cn_combo_scaffold_2013

Alias: PHE14_6

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2013_1
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..772
DNA (771bp) protein (257aa)
Epoxide hydrolase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R801_PHEZH
epoxide hydrolase
Epoxide hydrolase {ECO:0000313|EMBL:ACG77534.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zu
cn_combo_scaffold_2013_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

847..1599
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13DZ3_RHOPS
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE37696.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas
cn_combo_scaffold_2013_3
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1666..3141
DNA (1476bp) protein (492aa)
M20/M25/M40 family peptidase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PFA6_9DELT
M20/M25/M40 family peptidase {ECO:0000313|EMBL:EPX61731.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" sourc
hypothetical protein
cn_combo_scaffold_2013_4
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3223..4269
DNA (1047bp) protein (349aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Uncharacterized protein n=1 Tax=Treponema maltophilum ATCC 51939 RepID=S3K0K3_TREMA
Uncharacterized protein {ECO:0000313|EMBL:KFL28862.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
cn_combo_scaffold_2013_5
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4411..5022
DNA (612bp) protein (204aa)
protease subunit of ATP-dependent Clp protease; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA43_PHEZH
protease subunit of ATP-dependent Clp protease
cn_combo_scaffold_2013_6
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5110..6210
DNA (1101bp) protein (367aa)
Putative phenylpropionate dioxygenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA45_PHEZH
phenylpropionate dioxygenase Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
phenylpropionate dioxygenase
cn_combo_scaffold_2013_7
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6292..7074
DNA (783bp) protein (261aa)
Hydrolase, alpha/beta hydrolase fold family protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA48_PHEZH
hydrolase, alpha/beta hydrolase fold family protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hydrolase, alpha/beta hydrolase fold family protein
cn_combo_scaffold_2013_8
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7232..7864)
DNA (633bp) protein (211aa)
Glutathione S-transferase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA49_PHEZH
glutathione S-transferase
Glutathione S-transferase {ECO:0000313|EMBL:ACG79553.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobact
cn_combo_scaffold_2013_9
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7941..9581
DNA (1641bp) protein (547aa)
Acyl-CoA dehydrogenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA50_PHEZH
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ACG79554.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacteri
cn_combo_scaffold_2013_10
unknown

Not on your lists

9912..10124
DNA (213bp) protein (71aa)

This feature has no annotations

cn_combo_scaffold_2013_11
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10121..10774
DNA (654bp) protein (218aa)
Transcriptional regulator, TetR famil n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA52_PHEZH
TetR family transcriptional regulator
Transcriptional regulator, TetR famil {ECO:0000313|EMBL:ACG79556.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source=
cn_combo_scaffold_2013_12
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10946..11563
DNA (618bp) protein (206aa)
Transcriptional regulator, TetR family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA51_PHEZH
TetR family transcriptional regulator Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
transcriptional regulator, TetR family
cn_combo_scaffold_2013_13
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11596..11799
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA53_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG79557.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacter
cn_combo_scaffold_2013_14
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11801..12370
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA54_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG79558.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacter
cn_combo_scaffold_2013_15
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12367..12666)
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W6J2_9CAUL
hypothetical protein
Uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
cn_combo_scaffold_2013_16
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12825..13571
DNA (747bp) protein (249aa)
Electron transfer flavoprotein beta-subunit n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA55_PHEZH
etfB; electron transfer flavoprotein subunit beta
Electron transfer flavoprotein beta-subunit {ECO:0000313|EMBL:ACG79559.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" s
cn_combo_scaffold_2013_17
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13571..14515
DNA (945bp) protein (315aa)
Electron transfer flavoprotein alpha-subunit n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA56_PHEZH
etfA; electron transfer flavoprotein subunit alpha
Electron transfer flavoprotein alpha-subunit {ECO:0000313|EMBL:ACG79560.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;"
cn_combo_scaffold_2013_18
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14680..15681
DNA (1002bp) protein (334aa)
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA57_PHEZH
hbd; 3-hydroxybutyryl-CoA dehydrogenase
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:ACG79561.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Ph
cn_combo_scaffold_2013_19
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15785..17092
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA62_PHEZH
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACG79566.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacter
cn_combo_scaffold_2013_20
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17139..18002
DNA (864bp) protein (288aa)
HAD-superfamily subfamily IIA hydrolase like protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SWW7_CAUSK
sugar phosphatases of the HAD superfamily Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
HAD family hydrolase
cn_combo_scaffold_2013_21
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18037..18465
DNA (429bp) protein (143aa)
MaoC family protein/phosphate acetyl/butaryl transferase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA64_PHEZH
MaoC family protein/phosphate acetyl/butaryl transferase
MaoC family protein/phosphate acetyl/butaryl transferase {ECO:0000313|EMBL:ACG79568.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylob
cn_combo_scaffold_2013_22
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18470..19405
DNA (936bp) protein (312aa)
ribF; riboflavin biosynthesis protein RibF; K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
Riboflavin biosynthesis protein RibF n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA65_PHEZH
ribF; riboflavin biosynthesis protein RibF
cn_combo_scaffold_2013_23
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19443..19835)
DNA (393bp) protein (131aa)
Transcription elongation factor n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RF21_PHEZH
transcription elongation factor
Transcription elongation factor {ECO:0000313|EMBL:ACG77009.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Pheny
cn_combo_scaffold_2013_24
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20322..23234
DNA (2913bp) protein (971aa)
ileS; isoleucyl-tRNA synthetase; K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
Isoleucine--tRNA ligase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA66_PHEZH
ileS; isoleucyl-tRNA synthetase
cn_combo_scaffold_2013_25
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23249..23734
DNA (486bp) protein (162aa)
lspA; lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
Lipoprotein signal peptidase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA67_PHEZH
lspA; lipoprotein signal peptidase
cn_combo_scaffold_2013_26
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23727..24383
DNA (657bp) protein (219aa)
Uncharacterized protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=Q9AAA7_CAUCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAK22684.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter cresce
cn_combo_scaffold_2013_27
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24513..25484)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA69_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG79573.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacter
cn_combo_scaffold_2013_28
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25548..27146
DNA (1599bp) protein (533aa)
DNA mismatch repair protein MutL n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=MUTL_PHEZH
mutL; DNA mismatch repair protein
DNA mismatch repair protein MutL {ECO:0000255|HAMAP-Rule:MF_00149}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="
Displaying 28 items

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