ggKbase home page

cn_combo_scaffold_2328

Alias: PHE14_12

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2328_1
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(241..957)
DNA (717bp) protein (239aa)
Ribonuclease PH {ECO:0000255|HAMAP-Rule:MF_00564}; Short=RNase PH {ECO:0000255|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000255|HAMAP-Rule:MF_00564};; tRNA nucleotidyltransferase {ECO:0000255|HAMAP-Rul
Ribonuclease PH n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=RNPH_PHEZH
rph; ribonuclease PH
cn_combo_scaffold_2328_2
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1061..1909
DNA (849bp) protein (283aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RC86_PHEZH
hrcA; heat-inducible transcription repressor; K03705 heat-inducible transcriptional repressor Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
hrcA; heat-inducible transcription repressor
cn_combo_scaffold_2328_3
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1857..2126
DNA (270bp) protein (90aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VPJ5_CAUST
hrcA; heat-inducible transcription repressor; K03705 heat-inducible transcriptional repressor Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
heat-inducible transcription repressor HrcA
cn_combo_scaffold_2328_4
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2144..2749
DNA (606bp) protein (202aa)
Protein GrpE n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RC85_PHEZH
heat shock protein GrpE; K03687 molecular chaperone GrpE Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
grpE; heat shock protein GrpE
cn_combo_scaffold_2328_5
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2907..3824
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RB26_PHEZH
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hypothetical protein
cn_combo_scaffold_2328_6
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3944..5062
DNA (1119bp) protein (373aa)
dnaN; DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
DNA polymerase III subunit beta n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RC84_PHEZH
dnaN; DNA polymerase III subunit beta
cn_combo_scaffold_2328_7
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5066..6613)
DNA (1548bp) protein (516aa)
TonB protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RES5_PHEZH
TonB protein; K03832 periplasmic protein TonB Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
TonB protein
cn_combo_scaffold_2328_8
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6737..7879
DNA (1143bp) protein (381aa)
DNA replication and repair protein RecF n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RBE9_PHEZH
recF; recombination protein F; K03629 DNA replication and repair protein RecF Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
recF; recombination protein F
cn_combo_scaffold_2328_9
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7876..10317
DNA (2442bp) protein (814aa)
gyrB; DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
DNA gyrase subunit B n=2 Tax=Phenylobacterium zucineum RepID=B4RBD4_PHEZH
gyrB; DNA gyrase subunit B
cn_combo_scaffold_2328_10
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10334..10981)
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B5E294
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
cn_combo_scaffold_2328_11
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11100..12275)
DNA (1176bp) protein (392aa)
Major facilitator superfamily MFS_1 n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T5L6_CAUSK
major facilitator transporter Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
major facilitator transporter
cn_combo_scaffold_2328_12
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12519..14333
DNA (1815bp) protein (605aa)
Putative monooxygenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCQ6_PHEZH
monooxygenase
Putative monooxygenase {ECO:0000313|EMBL:ACG78243.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacteri
cn_combo_scaffold_2328_13
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14350..14910)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00035D024D
Acyltransferase {ECO:0000313|EMBL:KEZ88808.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
acyltransferase
cn_combo_scaffold_2328_14
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14907..15656)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI000369D928
methyltransferase
Methyltransferase domain protein {ECO:0000313|EMBL:EIK64283.1}; TaxID=1038923 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomo
cn_combo_scaffold_2328_15
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15653..16462)
DNA (810bp) protein (270aa)
Phytanoyl-CoA dioxygenase n=1 Tax=Pseudomonas putida CSV86 RepID=L1M0T8_PSEPU
phytanoyl-CoA dioxygenase Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
phytanoyl-CoA dioxygenase
cn_combo_scaffold_2328_16
GWA2_Elusimicrobia_51_34_curated, Elusimicrobia, Bacteria

Not on your lists

comp(16459..17526)
DNA (1068bp) protein (356aa)
hypothetical protein id=12493920 bin=THIO_HI species=Janthinobacterium lividum genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=GWA2_Elusimicrobia_51_34_curated
hypothetical protein
cn_combo_scaffold_2328_17
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17601..19325
DNA (1725bp) protein (575aa)
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RH59_PHEZH
O-linked N-acetylglucosamine transferase, SPINDLY family Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
O-linked N-acetylglucosamine transferase, SPINDLY family
cn_combo_scaffold_2328_18
Novispirillum itersonii, Novispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19322..20326
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI0003760BAA
cn_combo_scaffold_2328_19

Not on your lists

comp(20308..21189)
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI000368FFBB
Uncharacterized protein {ECO:0000313|EMBL:KKM75688.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
cn_combo_scaffold_2328_20
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21204..22376)
DNA (1173bp) protein (391aa)
DegT/DnrJ/EryC1/StrS aminotransferase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V4E3_SPHWW
DegT/DnrJ/EryC1/StrS aminotransferase Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
DegT/DnrJ/EryC1/StrS aminotransferase
cn_combo_scaffold_2328_21
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22454..24322)
DNA (1869bp) protein (623aa)
recQ; ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
ATP-dependent DNA helicase RecQ n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RBC5_PHEZH
recQ; ATP-dependent DNA helicase RecQ
cn_combo_scaffold_2328_22
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24362..25243)
DNA (882bp) protein (294aa)
D-amino acid aminohydrolase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RBC4_PHEZH
D-amino acid aminohydrolase
D-amino acid aminohydrolase {ECO:0000313|EMBL:ACG79769.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenyloba
Displaying 22 items

View Taxonomy