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cn_combo_scaffold_1187

Alias: RUB134_33

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Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1187_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(105..1595)
DNA (1491bp) protein (497aa)
Putative carboxyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM70_9SPHN
Strain MEJ076 contig_21, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ00357.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacteri
putative carboxyltransferase
cn_combo_scaffold_1187_2
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1592..2992)
DNA (1401bp) protein (467aa)
biotin carboxylase; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
Biotin carboxylase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM71_9SPHN
biotin carboxylase
cn_combo_scaffold_1187_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3000..3488)
DNA (489bp) protein (163aa)
Biotin carboxyl carrier protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM72_9SPHN
biotin carboxyl carrier protein
Biotin carboxyl carrier protein {ECO:0000313|EMBL:BAK65327.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingob
cn_combo_scaffold_1187_4
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3685..4491
DNA (807bp) protein (269aa)
Transcriptional regulator n=1 Tax=Saccharomonospora marina XMU15 RepID=H5X8L5_9PSEU
IclR family transcriptional regulator; K05818 IclR family transcriptional regulator, mhp operon transcriptional activator Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
IclR family transcriptional regulator
cn_combo_scaffold_1187_5
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4502..5002)
DNA (501bp) protein (167aa)
Alcohol dehydrogenase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MEM7_9RHIZ
Alcohol dehydrogenase {ECO:0000313|EMBL:EKF20586.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pa
alcohol dehydrogenase
cn_combo_scaffold_1187_6
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5144..5788
DNA (645bp) protein (215aa)
HAD-superfamily hydrolase, subfamily IA, variant 1 n=1 Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0G3J3_9DELT
haloacid dehalogenase superfamily enzyme, subfamily IA Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
HAD-superfamily hydrolase, subfamily IA, variant 1
cn_combo_scaffold_1187_7
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6066..7790
DNA (1725bp) protein (575aa)
Type IV pilus assembly protein PilB n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HX60_RUBGI
pilB; type IV pilus assembly protein PilB
Type IV pilus assembly protein PilB {ECO:0000313|EMBL:BAL97597.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (st
cn_combo_scaffold_1187_8
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7815..9035
DNA (1221bp) protein (407aa)
Pilus tip-associated protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LRJ6_9BURK
Pilus tip-associated protein {ECO:0000313|EMBL:EGJ10964.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 =
pilC; type IV pilus assembly protein PilC
cn_combo_scaffold_1187_9
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9048..9983
DNA (936bp) protein (312aa)
Type 4 prepilin-like proteins leader peptide-processing enzyme {ECO:0000256|RuleBase:RU003794}; EC=2.1.1.- {ECO:0000256|RuleBase:RU003794};; EC=3.4.23.43 {ECO:0000256|RuleBase:RU003794};; TaxID=987059
pilD; type 4 prepilin-like proteins leader peptide-processing enzyme PilD (EC:3.4.23.43) rbh
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LRJ5_9BURK
cn_combo_scaffold_1187_10
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10006..10653
DNA (648bp) protein (216aa)
coaE; dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
coaE; dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LRJ4_9BURK
cn_combo_scaffold_1187_11
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10650..11405
DNA (756bp) protein (252aa)
Cell division protein ZapD n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HX64_RUBGI
yacF; protein YacF
Cell division protein ZapD {ECO:0000256|HAMAP-Rule:MF_01092, ECO:0000256|SAAS:SAAS00004483}; Z ring-associated protein D {ECO:0000256|HAMAP-Rule:MF_01092}; TaxID=983917 species="Bacteria; Proteobacter
cn_combo_scaffold_1187_12
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11416..11658
DNA (243bp) protein (81aa)
DNA gyrase inhibitor YacG n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HX65_RUBGI
yacG; zinc-binding protein YacG
DNA gyrase inhibitor YacG {ECO:0000256|HAMAP-Rule:MF_00649, ECO:0000256|SAAS:SAAS00085446}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="R
cn_combo_scaffold_1187_13
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11747..12433)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00037C26E7
Molybdenum cofactor sulfurase {ECO:0000313|EMBL:ESJ19886.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus
MOSC-domain-containing protein
cn_combo_scaffold_1187_14
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12450..13226)
DNA (777bp) protein (259aa)
paaG; enoyl-CoA hydratase/isomerase (EC:4.2.1.17)
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WUI2_9BURK
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:EHR69408.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_00
cn_combo_scaffold_1187_15
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13258..14460)
DNA (1203bp) protein (401aa)
fadA; thiolase family protein FadA (EC:2.3.1.16)
Thiolase family protein FadA {ECO:0000313|EMBL:BAL94258.1}; EC=2.3.1.16 {ECO:0000313|EMBL:BAL94258.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.
Thiolase family protein FadA n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMM1_RUBGI
cn_combo_scaffold_1187_16
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14477..16861)
DNA (2385bp) protein (795aa)
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:ABM93379.1}; EC=1.1.1.35 {ECO:0000313|EMBL:ABM93379.1};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylib
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SCU0_METPP
cn_combo_scaffold_1187_17
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16926..17363)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HML9_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL94256.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
cn_combo_scaffold_1187_18
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17414..19204)
DNA (1791bp) protein (597aa)
acyl-CoA dehydrogenase oxidoreductase (EC:1.3.99.-)
acyl-CoA dehydrogenase n=1 Tax=Caldimonas manganoxidans RepID=UPI00037D4378
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EHR69404.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
cn_combo_scaffold_1187_19
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19287..19988)
DNA (702bp) protein (234aa)
TetR family transcriptional regulator n=1 Tax=Ideonella sp. B508-1 RepID=UPI000346A387
TetR family regulatory protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
TetR family regulatory protein
cn_combo_scaffold_1187_20
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20129..20704
DNA (576bp) protein (192aa)
Restriction endonuclease n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WU78_9BURK
Restriction endonuclease {ECO:0000313|EMBL:EHR69400.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSH
putative endonuclease
cn_combo_scaffold_1187_21
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20787..23633)
DNA (2847bp) protein (949aa)
Aconitate hydratase 1 {ECO:0000313|EMBL:ADX45083.1}; EC=4.2.1.3 {ECO:0000313|EMBL:ADX45083.1};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Aci
aconitate hydratase 1 (EC:4.2.1.3)
Aconitate hydratase 1 n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QCU0_ACIAP
cn_combo_scaffold_1187_22
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23793..25169)
DNA (1377bp) protein (459aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WD61_ACISJ
integral membrane sensor signal transduction histidine kinase
cn_combo_scaffold_1187_23
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25166..25846)
DNA (681bp) protein (227aa)
Response regulator receiver n=2 Tax=Alicycliphilus denitrificans RepID=E8TYL8_ALIDB
winged helix family two component transcriptional regulator
Response regulator receiver {ECO:0000313|EMBL:ADV02027.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus
cn_combo_scaffold_1187_24
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25827..26192)
DNA (366bp) protein (122aa)
Membrane protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WD63_ACISJ
membrane protein
Membrane protein {ECO:0000313|EMBL:ABM44188.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax
cn_combo_scaffold_1187_25
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26300..26743
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037F858D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34861.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Aci
cn_combo_scaffold_1187_26
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26791..27267
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WD66_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM44191.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Aci
cn_combo_scaffold_1187_27
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27280..29514
DNA (2235bp) protein (745aa)
Oxidoreductase FAD/NAD(P)-binding domain protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WD67_ACISJ
FAD/NAD(P)-binding oxidoreductase subunit
Oxidoreductase FAD/NAD(P)-binding domain protein {ECO:0000313|EMBL:ABM44192.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
cn_combo_scaffold_1187_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29495..30502
DNA (1008bp) protein (336aa)
ApbE family lipoprotein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBP5_ALIDK
ApbE family lipoprotein
ApbE family lipoprotein {ECO:0000313|EMBL:AEB86966.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus den
cn_combo_scaffold_1187_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30499..31194)
DNA (696bp) protein (232aa)
Branched-chain amino acid ABC transporter, ATP-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XMF0_VARPD
branched-chain amino acid ABC transporter, ATP-binding protein rbh
Branched-chain amino acid ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AGU53778.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Vari
cn_combo_scaffold_1187_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31191..32753)
DNA (1563bp) protein (521aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003807CB2
ABC-type transporter, ATPase and permease components
ABC-type transporter, ATPase and permease components {ECO:0000313|EMBL:AGU53777.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;"
Displaying items 1-30 of 41 in total

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