ggKbase home page

cn_combo_scaffold_1274

Alias: RUB134_34

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1274_1
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

95..748
DNA (654bp) protein (218aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-
imidazole glycerol phosphate synthase n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034C6BAD
hisH; imidazole glycerol phosphate synthase subunit HisH
cn_combo_scaffold_1274_2
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

817..1566
DNA (750bp) protein (250aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule
hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LTS1_9BURK
cn_combo_scaffold_1274_3
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1620..2399
DNA (780bp) protein (260aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP
hisF; imidazole glycerol phosphate synthase subunit HisF (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LTS2_9BURK
cn_combo_scaffold_1274_4
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2396..2986
DNA (591bp) protein (197aa)
putative RNA methyltransferase (EC:2.1.1.-)
Putative RNA methyltransferase {ECO:0000313|EMBL:BAL94206.1}; EC=2.1.1.- {ECO:0000313|EMBL:BAL94206.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax
Putative methylase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LTS3_9BURK
cn_combo_scaffold_1274_5
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2983..3486
DNA (504bp) protein (168aa)
kdtB; pantetheine-phosphate adenylyltransferase KdtB (EC:2.7.7.3); K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
pantetheine-phosphate adenylyltransferase (EC:2.7.7.3)
phosphopantetheine adenylyltransferase n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034B4A79
cn_combo_scaffold_1274_6
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3512..3961)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LTS6_9BURK
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
hypothetical protein
cn_combo_scaffold_1274_7
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3958..4596)
DNA (639bp) protein (213aa)
pth; peptidyl-tRNA hydrolase Pth (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBa
Peptidyl-tRNA hydrolase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMH3_RUBGI
cn_combo_scaffold_1274_8
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4734..5378)
DNA (645bp) protein (215aa)
50S ribosomal protein L25 n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMH4_RUBGI
rplY; 50S ribosomal protein L25
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=983917 sp
cn_combo_scaffold_1274_9
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5455..6417)
DNA (963bp) protein (321aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
prs; ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LTS9_9BURK
cn_combo_scaffold_1274_trna_2
unknown

Not on your lists

comp(6519..6592)
DNA (74bp)
transferRNA
cn_combo_scaffold_1274_10
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6632..7537)
DNA (906bp) protein (302aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:M
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LTT0_9BURK
cn_combo_scaffold_1274_11
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7543..8076)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LTT1_9BURK
Outer-membrane lipoprotein LolB {ECO:0000256|SAAS:SAAS00002103}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus J
hypothetical protein
cn_combo_scaffold_1274_12
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8076..9863)
DNA (1788bp) protein (596aa)
TPR repeat protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMH8_RUBGI
TPR repeat protein
TPR repeat protein {ECO:0000313|EMBL:BAL94215.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245
cn_combo_scaffold_1274_13
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9908..10741
DNA (834bp) protein (278aa)
mutM; formamidopyrimidine-DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase MutM (EC:3.2.2.23 4.2.99.18)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020852}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule
Formamidopyrimidine-DNA glycosylase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMH9_RUBGI
cn_combo_scaffold_1274_14
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10792..12843
DNA (2052bp) protein (684aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LTT4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ11752.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
hypothetical protein
cn_combo_scaffold_1274_15
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12948..13895
DNA (948bp) protein (316aa)
mutY; A/G-specific adenine glycosylase (EC:3.2.2.-)
A/G-specific adenine glycosylase MutY {ECO:0000313|EMBL:BAL94218.1}; EC=3.2.2.- {ECO:0000313|EMBL:BAL94218.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rub
A/G-specific adenine glycosylase MutY n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMI1_RUBGI
cn_combo_scaffold_1274_16
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13892..14539)
DNA (648bp) protein (216aa)
Peptidase S16, lon domain protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQ14_9BURK
Peptidase S16, lon domain protein {ECO:0000313|EMBL:EHR73233.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
cn_combo_scaffold_1274_17
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14532..15434)
DNA (903bp) protein (301aa)
UPF0042 nucleotide-binding protein RBXJA2T_15568 n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LTT7_9BURK
Nucleotide-binding protein RBXJA2T_15568 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoa
hypothetical protein
cn_combo_scaffold_1274_18
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15431..17131)
DNA (1701bp) protein (567aa)
DNA repair protein RecN n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LTT8_9BURK
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; R
recN; DNA repair protein RecN
cn_combo_scaffold_1274_19
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17149..18036)
DNA (888bp) protein (296aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-
ppnK; putative inorganic polyphosphate/ATP-NAD kinase (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WP22_9BURK
cn_combo_scaffold_1274_20
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18154..19191
DNA (1038bp) protein (346aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMI6_RUBGI
hrcA; heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gel
cn_combo_scaffold_1274_trna_1
unknown

Not on your lists

19269..19342
DNA (74bp)
transferRNA
cn_combo_scaffold_1274_21
Intrasporangium calvum, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19557..20039)
DNA (483bp) protein (161aa)
Hemerythrin HHE cation binding domain protein n=1 Tax=Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP) RepID=E6SCT1_INTC7
hemerythrin HHE cation binding domain protein
Hemerythrin HHE cation binding domain protein {ECO:0000313|EMBL:ADU47486.1}; TaxID=710696 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangi
cn_combo_scaffold_1274_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20238..20894
DNA (657bp) protein (219aa)
2-dehydropantoate 2-reductase (EC:1.1.1.169); K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
2-dehydropantoate 2-reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase n=1 Tax=Ralstonia pickettii (strain 12D) RepID=C6BKB0_RALP1
cn_combo_scaffold_1274_23
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20943..22181)
DNA (1239bp) protein (413aa)
peptidase M20 n=1 Tax=Caldimonas manganoxidans RepID=UPI000371F8F7
Peptidase M20 {ECO:0000313|EMBL:KGF83444.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
peptidase M20
cn_combo_scaffold_1274_24
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22178..23962)
DNA (1785bp) protein (595aa)
putative bifunctional OHCU decarboxylase/allantoate amidohydrolase (EC:3.5.1.87)
Amidase, hydantoinase/carbamoylase family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VJ49_POLNA
Putative bifunctional OHCU decarboxylase/allantoate amidohydrolase {ECO:0000313|EMBL:KDB53427.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;"
cn_combo_scaffold_1274_25
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23965..24978)
DNA (1014bp) protein (338aa)
urate catabolism protein (EC:3.5.1.41)
Putative urate catabolism protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WS56_9BURK
Putative urate catabolism protein {ECO:0000313|EMBL:EHR72853.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
cn_combo_scaffold_1274_26
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24975..25709)
DNA (735bp) protein (245aa)
Transcriptional regulator, GntR family n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y3X6_LEPCP
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ACB33370.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (s
cn_combo_scaffold_1274_27
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25751..26974
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000367AB04
Uncharacterized protein {ECO:0000313|EMBL:KDB53423.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans D
hypothetical protein
cn_combo_scaffold_1274_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27018..27728)
DNA (711bp) protein (237aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Variovorax sp. CF313 RepID=J2TGP8_9BURK
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJL77607.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
ABC transporter-like protein
Displaying items 1-30 of 41 in total

View Taxonomy