ggKbase home page

cn_combo_scaffold_268

Alias: RUB134_11

Search features with annotation key words

Displaying items 61-90 of 110 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_268_61
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60855..61136
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HNI4_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL94571.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
cn_combo_scaffold_268_62
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61153..62463
DNA (1311bp) protein (437aa)
gltA; citrate synthase GltA (EC:2.3.3.1)
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkh
Citrate synthase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HNI5_RUBGI
cn_combo_scaffold_268_63
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62470..63471
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQK8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ10626.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
hypothetical protein
cn_combo_scaffold_268_64
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63533..64834)
DNA (1302bp) protein (434aa)
Putative amino acid aldolase or racemase n=1 Tax=Variovorax sp. CF313 RepID=J2KAK6_9BURK
Putative amino acid aldolase or racemase {ECO:0000313|EMBL:EJL70223.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Vari
D-serine deaminase
cn_combo_scaffold_268_65
unknown

Not on your lists

65173..65496
DNA (324bp) protein (108aa)

This feature has no annotations

cn_combo_scaffold_268_66
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65688..66350)
DNA (663bp) protein (221aa)
Transcriptional regulator n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQX6_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EHR72756.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
GntR family transcriptional regulator
cn_combo_scaffold_268_67
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66467..68620
DNA (2154bp) protein (718aa)
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:EGJ10622.1}; EC=5.4.99.2 {ECO:0000313|EMBL:EGJ10622.1};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" s
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQK4_9BURK
cn_combo_scaffold_268_68
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68660..69679
DNA (1020bp) protein (340aa)
arginine/ornithine transport system ATPase; K07588 LAO/AO transport system kinase [EC:2.7.-.-] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
Membrane ATPase/protein kinase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQK3_9BURK
argK; arginine/ornithine transport system ATPase ArgK
cn_combo_scaffold_268_69
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69694..71226
DNA (1533bp) protein (511aa)
propionyl-CoA carboxylase (EC:6.4.1.3)
Acetyl-CoA carboxylase, carboxyltransferase component (Subunits alpha and beta) n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQX3_9BURK
Acetyl-CoA carboxylase, carboxyltransferase component (Subunits alpha and beta) {ECO:0000313|EMBL:EHR72753.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" so
cn_combo_scaffold_268_70
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71290..71553
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00035C357C
looped-hinge helix DNA binding domain, AbrB family
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
cn_combo_scaffold_268_71
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71550..71945
DNA (396bp) protein (132aa)
Uncharacterized protein n=2 Tax=Pseudomonas RepID=J0Y5A7_9PSED
Putative nucleic-acid-binding protein, contains PIN domain containing protein {ECO:0000313|EMBL:ESW56392.1}; TaxID=463794 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseud
twitching motility protein PilT
cn_combo_scaffold_268_72
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72010..74037
DNA (2028bp) protein (676aa)
Propionyl-CoA carboxylase subunit alpha n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLX2_9BURK
Propionyl-CoA carboxylase subunit alpha {ECO:0000313|EMBL:EGJ09340.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyt
biotin carboxylase
cn_combo_scaffold_268_73
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74053..74559
DNA (507bp) protein (169aa)
gloA; glyoxalase/bleomycin resistance protein/dioxygenase (EC:5.1.99.1)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLX4_9BURK
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EGJ09342.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax
cn_combo_scaffold_268_74
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74556..75326
DNA (771bp) protein (257aa)
demethylmenaquinone methyltransferase (EC:2.1.1.-)
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:ABM94295.1}; EC=2.1.1.- {ECO:0000313|EMBL:ABM94295.1};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Met
Demethylmenaquinone methyltransferase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SFF6_METPP
cn_combo_scaffold_268_75
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75323..76777
DNA (1455bp) protein (485aa)
betaine-aldehyde dehydrogenase (EC:1.2.1.8)
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:ABE42058.1}; EC=1.2.1.8 {ECO:0000313|EMBL:ABE42058.1};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonada
Betaine-aldehyde dehydrogenase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12HD4_POLSJ
cn_combo_scaffold_268_76
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

77127..79022
DNA (1896bp) protein (632aa)
TonB-dependent outer membrane cobalamin receptor n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SNZ2_METPP
btuB; TonB-dependent outer membrane cobalamin receptor
TonB-dependent outer membrane cobalamin receptor {ECO:0000313|EMBL:ABM97281.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium
cn_combo_scaffold_268_77
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79066..79632
DNA (567bp) protein (189aa)
Adenosylcobinamide kinase {ECO:0000313|EMBL:EWS59965.1}; EC=2.7.1.156 {ECO:0000313|EMBL:EWS59965.1};; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.
cobU; adenosylcobinamide kinase (EC:2.7.1.156)
Adenosylcobinamide kinase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SNZ4_METPP
cn_combo_scaffold_268_78
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79629..80519
DNA (891bp) protein (297aa)
Iron(III) dicitrate-binding protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SNZ5_METPP
iron(III) dicitrate-binding protein rbh
Iron(III) dicitrate-binding protein {ECO:0000313|EMBL:ABM97284.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilu
cn_combo_scaffold_268_79
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80516..81568
DNA (1053bp) protein (351aa)
Iron ABC transporter, permease protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SNZ6_METPP
iron ABC transporter permease rbh
Iron ABC transporter, permease protein {ECO:0000313|EMBL:ABM97285.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiph
cn_combo_scaffold_268_80
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

81605..82426
DNA (822bp) protein (274aa)
iron ABC transporter ATP-binding protein (EC:3.6.3.34)
Iron ABC transporter ATP-binding protein {ECO:0000313|EMBL:ABM97286.1}; EC=3.6.3.34 {ECO:0000313|EMBL:ABM97286.1};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Iron ABC transporter ATP-binding protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SNZ7_METPP
cn_combo_scaffold_268_81
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82458..83027
DNA (570bp) protein (190aa)
btuR; cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17)
Cob(I)yrinic acid a,c-diamide adenosyltransferase {ECO:0000313|EMBL:ABM97287.1}; EC=2.5.1.17 {ECO:0000313|EMBL:ABM97287.1};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkhol
Cob(I)yrinic acid a,c-diamide adenosyltransferase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SNZ8_METPP
cn_combo_scaffold_268_82
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

83034..83996
DNA (963bp) protein (321aa)
cbiB; adenosylcobinamide-phosphate synthase (EC:6.3.1.10) rbh
Cobalamin biosynthesis protein CobD n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SNZ9_METPP
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleip
cn_combo_scaffold_268_83
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

83993..85027
DNA (1035bp) protein (345aa)
hisC; aminotransferase (EC:2.6.1.-)
Aminotransferase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SP00_METPP
Histidinol-phosphate aminotransferase {ECO:0000313|EMBL:EWS59989.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.
cn_combo_scaffold_268_84
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

85056..86543
DNA (1488bp) protein (496aa)
cobQ; adenosylcobyric acid synthase (EC:6.3.5.10) rbh
Cobyric acid synthase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SP01_METPP
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain
cn_combo_scaffold_268_85
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

86558..87637
DNA (1080bp) protein (360aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013344}; Short=NN:DBI PRT {ECO:0000256|HAMAP-Rule:MF_00230};; EC=2.4.2.2
cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21) rbh
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SP02_METPP
cn_combo_scaffold_268_86
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

87637..88461
DNA (825bp) protein (275aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin sy
cobS; cobalamin-5'-phosphate synthase (EC:2.7.8.26)
Cobalamin synthase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SP03_METPP
cn_combo_scaffold_268_87
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88458..89075
DNA (618bp) protein (206aa)
Fructose-2,6-biphosphatase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SP04_METPP
Bifunctional RNase H/acid phosphatase {ECO:0000313|EMBL:EWS53485.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
gpmB; fructose-2,6-biphosphatase
cn_combo_scaffold_268_88
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

89119..89925
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3T5_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH37162.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_268_89
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89918..91315
DNA (1398bp) protein (466aa)
Peptidase C14 caspase catalytic subunit p20 n=1 Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZTC6_DESOH
peptidase C14 caspase catalytic subunit p20 Tax=GWA2_Gallionellales_60_18_curated
hypothetical protein
cn_combo_scaffold_268_90
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

91402..92298
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HNJ9_RUBGI
LysR family transcriptional regulator Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
LysR family transcriptional regulator
Displaying items 61-90 of 110 in total

View Taxonomy