ggKbase home page

cn_combo_scaffold_268

Alias: RUB134_11

Search features with annotation key words

Displaying items 1-30 of 110 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_268_1
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95..709)
DNA (615bp) protein (205aa)
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, E
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=HIS7_METPP
cn_combo_scaffold_268_2
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(706..1800)
DNA (1095bp) protein (365aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID
Histidinol-phosphate aminotransferase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XX74_LEPCP
histidinol-phosphate aminotransferase
cn_combo_scaffold_268_3
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1797..2249)
DNA (453bp) protein (151aa)
Putative nucleic-acid-binding protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQ36_9BURK
Putative nucleic-acid-binding protein {ECO:0000313|EMBL:EHR73255.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.
PilT domain-containing protein
cn_combo_scaffold_268_4
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2246..2503)
DNA (258bp) protein (86aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQ37_9BURK
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
hypothetical protein
cn_combo_scaffold_268_5
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2647..3231
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LTW4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ11782.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
hypothetical protein
cn_combo_scaffold_268_6
unknown

Not on your lists

3312..3512
DNA (201bp) protein (67aa)

This feature has no annotations

cn_combo_scaffold_268_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3759..4070
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002F35570
cytochrome C class I Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
cytochrome C transmembrane protein
cn_combo_scaffold_268_8
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4179..4727)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLG7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ09185.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
LemA family protein
cn_combo_scaffold_268_9
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4730..6004)
DNA (1275bp) protein (425aa)
proA; glutamate-5-semialdehyde dehydrogenase ProA (EC:1.2.1.41); K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
proA; glutamate-5-semialdehyde dehydrogenase ProA (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLG8_9BURK
cn_combo_scaffold_268_10
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6034..7026)
DNA (993bp) protein (331aa)
Putative permease n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WVU6_9BURK
MdcF malonate transporter; K07088 Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
MdcF malonate transporter
cn_combo_scaffold_268_11
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7079..9676)
DNA (2598bp) protein (866aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=987059 species="Bacteria; Proteobac
topB; DNA topoisomerase III TopB (EC:5.99.1.2)
DNA topoisomerase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLH2_9BURK
cn_combo_scaffold_268_12
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9756..10271
DNA (516bp) protein (172aa)
SET domain protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXS2_RUBGI
SET domain-containing protein
SET domain protein {ECO:0000313|EMBL:BAL97809.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245
cn_combo_scaffold_268_13
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10315..11145
DNA (831bp) protein (277aa)
Biotin--acetyl-CoA-carboxylase ligase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y7Q4_LEPCP
biotin--acetyl-CoA-carboxylase ligase
Biotin--acetyl-CoA-carboxylase ligase {ECO:0000313|EMBL:ACB32502.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Lepto
cn_combo_scaffold_268_14
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11149..11862
DNA (714bp) protein (238aa)
Putative signal peptide protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXS4_RUBGI
putative signal peptide protein
Putative signal peptide protein {ECO:0000313|EMBL:BAL97811.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain
cn_combo_scaffold_268_15
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11894..12664)
DNA (771bp) protein (257aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WS61_9BURK
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:EHR72858.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source
ABC transporter permease
cn_combo_scaffold_268_16
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12685..13503)
DNA (819bp) protein (273aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WS60_9BURK
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component {ECO:0000313|EMBL:EHR72857.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="
ABC transporter ATP-binding protein
cn_combo_scaffold_268_17
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13529..14587)
DNA (1059bp) protein (353aa)
NMT1/THI5-like domain-containing protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LMD0_9BURK
NMT1/THI5-like domain-containing protein {ECO:0000313|EMBL:EGJ09498.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatily
NMT1/THI5 like domain-containing protein
cn_combo_scaffold_268_18
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14915..17494
DNA (2580bp) protein (860aa)
multi-sensor hybrid histidine kinase (EC:2.7.13.3)
Multi-sensor hybrid histidine kinase n=1 Tax=Marichromatium purpuratum 984 RepID=F9U1I5_MARPU
Tax=BJP_IG2103_Dechloromonas_60_92
cn_combo_scaffold_268_19
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17526..19106)
DNA (1581bp) protein (527aa)
Aminoglycoside phosphotransferase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X534_THIK1
aminoglycoside phosphotransferase
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:ADG29858.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K
cn_combo_scaffold_268_20
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19167..20777
DNA (1611bp) protein (537aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00036EEB18
peptidoglycan-binding domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
peptidoglycan-binding domain-containing protein
cn_combo_scaffold_268_21
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20823..21431
DNA (609bp) protein (203aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y555_LEPCP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB32285.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodni
cn_combo_scaffold_268_22
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21462..23108
DNA (1647bp) protein (549aa)
AMP-dependent synthetase and ligase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LMC1_9BURK
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EGJ09489.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus
AMP-dependent synthetase and ligase
cn_combo_scaffold_268_23
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23131..24447)
DNA (1317bp) protein (439aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47BV9_DECAR
hypothetical protein
Tax=BJP_IG2103_Dechloromonas_63_51
cn_combo_scaffold_268_24
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24615..26021)
DNA (1407bp) protein (469aa)
Protein kinase (Serine/threonine-protein kinase)-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XVW4_RAMTT
kinase domain protein
Kinase domain protein {ECO:0000313|EMBL:AJZ58371.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungoru
cn_combo_scaffold_268_25
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26147..26908
DNA (762bp) protein (254aa)
2-dehydro-3-deoxyglucarate aldolase (EC:4.1.2.-)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQE2_9BURK
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase {ECO:0000313|EMBL:EHR71272.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium
cn_combo_scaffold_268_26
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27018..28169
DNA (1152bp) protein (384aa)
Diguanylate cyclase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W6K2_ACISJ
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ABM41877.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS4
cn_combo_scaffold_268_27
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28394..29200
DNA (807bp) protein (269aa)
Crp/FNR family transcriptional regulator n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LMB9_9BURK
Crp/FNR family transcriptional regulator {ECO:0000313|EMBL:EGJ09487.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatily
CarD family transcriptional regulator
cn_combo_scaffold_268_28
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29424..31004
DNA (1581bp) protein (527aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HWE8_RUBGI
putative ABC transporter ATP-binding protein
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAL97335.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelati
cn_combo_scaffold_268_29
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30997..32076
DNA (1080bp) protein (360aa)
Inner-membrane translocator n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y3L1_LEPCP
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ACB35714.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC
cn_combo_scaffold_268_30
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32123..33043
DNA (921bp) protein (307aa)
Putative ABC-type transport system, permease component n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WT46_9BURK
Putative ABC-type transport system, permease component {ECO:0000313|EMBL:EHR73582.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="
ABC transporter permease
Displaying items 1-30 of 110 in total

View Taxonomy