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cn_combo_scaffold_275

Alias: RUB134_12

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Displaying items 1-30 of 110 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_275_1
Rheinheimera nanhaiensis, Rheinheimera, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..81
DNA (81bp) protein (27aa)
Minor extracellular serine protease Vpr; EC=3.4.21.-;; TaxID=562729 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Rheinheimera.;" source="Rheinheimera nanhaiensis E407-8.;"
Minor extracellular serine protease Vpr n=1 Tax=Rheinheimera nanhaiensis E407-8 RepID=I1DVR6_9GAMM
subtilisin-like serine protease
cn_combo_scaffold_275_2
RBG_13_Chloroflexi_50_21_curated, Chloroflexi, Bacteria

Not on your lists

107..2554
DNA (2448bp) protein (816aa)
subtilisin-like serine protease Tax=RBG_13_Chloroflexi_50_21_curated
subtilisin-like serine protease
cn_combo_scaffold_275_3
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2889..5633)
DNA (2745bp) protein (915aa)
Protein translocase subunit SecA n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LNY8_9BURK
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" so
secA; preprotein translocase subunit SecA
cn_combo_scaffold_275_4
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5773..6828)
DNA (1056bp) protein (352aa)
Putative transmembrane protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SJG0_METPP
transmembrane protein rbh
Stage II sporulation protein Q {ECO:0000313|EMBL:EWS60297.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
cn_combo_scaffold_275_5
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6849..7217
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HN07_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL94394.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
cn_combo_scaffold_275_6
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7486..7800
DNA (315bp) protein (105aa)
cytochrome C n=1 Tax=Methyloversatilis universalis RepID=UPI0003633CAA
Cytochrome c, class I {ECO:0000313|EMBL:EGK70744.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis
soxE; putative sulfide dehydrogenase (flavocytochrome), cytochrome c subunit SoxE
cn_combo_scaffold_275_7
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7810..9096
DNA (1287bp) protein (429aa)
Flavocytochrome C sulphide dehydrogenase flavin-binding protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LM26_9BURK
Flavocytochrome C sulphide dehydrogenase flavin-binding protein {ECO:0000313|EMBL:EGJ09394.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source
flavocytochrome c flavin subunit
cn_combo_scaffold_275_8
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9269..9664)
DNA (396bp) protein (132aa)
Uncharacterized protein n=3 Tax=Legionella pneumophila RepID=A5IEH3_LEGPC
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
hypothetical protein
cn_combo_scaffold_275_trna_1
unknown

Not on your lists

comp(9686..9765)
DNA (80bp)
transferRNA
cn_combo_scaffold_275_9
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9835..10413)
DNA (579bp) protein (193aa)
Stringent starvation protein B n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WHH7_9BURK
Stringent starvation protein B {ECO:0000313|EMBL:EHR70109.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
sspB; stringent starvation protein B SspB
cn_combo_scaffold_275_10
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10534..11145)
DNA (612bp) protein (204aa)
Stringent starvation protein A SspA n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HN05_RUBGI
sspA; stringent starvation protein A SspA
Stringent starvation protein A SspA {ECO:0000313|EMBL:BAL94392.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (st
cn_combo_scaffold_275_11
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11270..12040)
DNA (771bp) protein (257aa)
cytochrome c1 (EC:1.10.2.2); K00413 ubiquinol-cytochrome c reductase cytochrome c1 subunit Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
cytochrome c1 (EC:1.10.2.2)
cytochrome C n=1 Tax=Caldimonas manganoxidans RepID=UPI00037F6EDD
cn_combo_scaffold_275_12
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12078..13484)
DNA (1407bp) protein (469aa)
cytochrome B (EC:1.10.2.2)
Cytochrome b n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SE23_METPP
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;
cn_combo_scaffold_275_13
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13502..14122)
DNA (621bp) protein (207aa)
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria;
ubiquinol-cytochrome c reductase, iron-sulfur subunit (EC:1.10.2.2)
ubiquinol-cytochrome C reductase n=1 Tax=Caldimonas manganoxidans RepID=UPI0003680834
cn_combo_scaffold_275_14
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14296..14727
DNA (432bp) protein (144aa)
Large-conductance mechanosensitive channel n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WHH2_9BURK
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphae
mscL; large conductance mechanosensitive channel protein MscL
cn_combo_scaffold_275_15
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14821..17211
DNA (2391bp) protein (797aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LNY0_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGJ10048.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
cn_combo_scaffold_275_16
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17223..18293)
DNA (1071bp) protein (357aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosph
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LNX9_9BURK
cn_combo_scaffold_275_17
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18290..19039)
DNA (750bp) protein (250aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=983917 species="Bacteria
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMZ8_RUBGI
hypothetical protein rbh
cn_combo_scaffold_275_18
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19089..19883)
DNA (795bp) protein (265aa)
Sec-independent protein translocase protein TatC n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LNX6_9BURK
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubriviva
tatC; sec-independent protein translocase protein TatC
cn_combo_scaffold_275_19
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19880..20371)
DNA (492bp) protein (164aa)
Sec-independent protein translocase protein TatB n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LNX5_9BURK
Sec-independent protein translocase protein TatB {ECO:0000256|HAMAP-Rule:MF_00237, ECO:0000256|SAAS:SAAS00028234}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
tatB; sec-independent protein translocase protein TatB
cn_combo_scaffold_275_20
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20432..20677)
DNA (246bp) protein (82aa)
Sec-independent protein translocase protein TatA n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LNX4_9BURK
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubriviva
tatA; twin arginine translocase A
cn_combo_scaffold_275_21
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20747..21094)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LNX3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ10041.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
putative histidine triad (HIT) protein
cn_combo_scaffold_275_22
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21099..21458)
DNA (360bp) protein (120aa)
hisE; phosphoribosyl-ATP pyrophosphatase HisE (EC:3.6.1.31); K01523 phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
phosphoribosyl-ATP pyrophosphatase (EC:3.6.1.31)
phosphoribosyl-ATP pyrophosphatase n=1 Tax=Ideonella sp. B508-1 RepID=UPI000347DC12
cn_combo_scaffold_275_23
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21455..21901)
DNA (447bp) protein (149aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0
phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19)
Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WHG0_9BURK
cn_combo_scaffold_275_24
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21912..22343)
DNA (432bp) protein (144aa)
ADP-ribose pyrophosphatase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WHF9_9BURK
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EHR70091.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
NUDIX hydrolase
cn_combo_scaffold_275_25
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22333..23202)
DNA (870bp) protein (290aa)
AAA ATPase family protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LNW8_9BURK
AAA ATPase family protein {ECO:0000313|EMBL:EGJ10036.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATC
hypothetical protein
cn_combo_scaffold_275_26
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23247..23903)
DNA (657bp) protein (219aa)
Transcriptional regulator n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WHF6_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EHR70088.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
TetR family transcriptional regulator
cn_combo_scaffold_275_27
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24044..24775)
DNA (732bp) protein (244aa)
Pyridoxine 5'-phosphate phosphatase PdxP n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMY5_RUBGI
Pyrimidine 5'-nucleotidase {ECO:0000313|EMBL:KDB52813.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natan
pdxP; pyridoxine 5'-phosphate phosphatase PdxP
cn_combo_scaffold_275_28
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24775..25677)
DNA (903bp) protein (301aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotra
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WHF4_9BURK
cn_combo_scaffold_275_29
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25791..26087
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00037FB66E
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
hypothetical protein
Displaying items 1-30 of 110 in total

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