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cn_combo_scaffold_474

Alias: RUB134_17

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Displaying items 1-30 of 97 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_474_1
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70..246
DNA (177bp) protein (59aa)
Plasmid stabilization system n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1D7_THIK1
plasmid stabilization system
Plasmid stabilization system {ECO:0000313|EMBL:ADG30933.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (
cn_combo_scaffold_474_2
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(475..1128)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I2Z5_BORPD
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM23074.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
cn_combo_scaffold_474_3
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1211..5455)
DNA (4245bp) protein (1415aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HVJ8_RUBGI
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAL97035.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
cn_combo_scaffold_474_4
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5480..7348)
DNA (1869bp) protein (623aa)
Surface antigen (D15) n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HVJ6_RUBGI
surface antigen (D15)
Surface antigen (D15) {ECO:0000313|EMBL:BAL97033.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 1002
cn_combo_scaffold_474_5
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7345..8517)
DNA (1173bp) protein (391aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WHL4_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR70276.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacter
hypothetical protein
cn_combo_scaffold_474_6
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8594..10669)
DNA (2076bp) protein (692aa)
Peptidase S9 prolyl oligopeptidase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPK1_9BURK
Peptidase S9 prolyl oligopeptidase {ECO:0000313|EMBL:EGJ10269.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus
putative S9 family peptidase
cn_combo_scaffold_474_7
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10712..11305)
DNA (594bp) protein (198aa)
Putative amino-acid acetyltransferase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPK0_9BURK
Putative amino-acid acetyltransferase {ECO:0000313|EMBL:EGJ10268.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilytic
putative N-acetyltransferase
cn_combo_scaffold_474_8
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11331..12185)
DNA (855bp) protein (285aa)
MoxR-like ATPase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WHL8_9BURK
aaa ATPase central domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
putative nucleoside-triphosphatase rbh
cn_combo_scaffold_474_9
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12348..13007
DNA (660bp) protein (220aa)
Cytochrome c553-like protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SER7_METPP
cytochrome c553-like protein
Cytochrome c4 {ECO:0000313|EMBL:EWS60738.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
cn_combo_scaffold_474_10
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13100..14332
DNA (1233bp) protein (411aa)
Putative HD-GYP hydrolase domain containing protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HVJ0_RUBGI
putative HD-GYP hydrolase domain containing protein
Putative HD-GYP hydrolase domain containing protein {ECO:0000313|EMBL:BAL97027.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax
cn_combo_scaffold_474_11
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14349..14828)
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJ21_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR73662.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
cn_combo_scaffold_474_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14951..16105
DNA (1155bp) protein (385aa)
high affinity branched-chain amino acid amino acid ABC transporter substrate-binding protein (EC:3.4.22.34); K01999 branched-chain amino acid transport system substrate-binding protein Tax=RIFCSPLOWO2
high affinity branched-chain amino acid amino acid ABC transporter substrate-binding protein (EC:3.4.22.34)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002E890A0
cn_combo_scaffold_474_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16137..17000
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F01AC9
branched-chain amino acid ABC transporter permease; K01997 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
branched-chain amino acid ABC transporter permease
cn_combo_scaffold_474_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17026..17886
DNA (861bp) protein (287aa)
inner-membrane translocator (EC:3.6.3.25); K01998 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
inner-membrane translocator (EC:3.6.3.25)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00035CC595
cn_combo_scaffold_474_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17883..18704
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002FCD061
branched-chain amino acid ABC transporter ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
livG; branched-chain amino acid transport system ATP-binding protein
cn_combo_scaffold_474_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18697..19401
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI000307C1D0
branched-chain amino acid ABC transporter ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
branched-chain amino acid ABC transporter ATP-binding protein
cn_combo_scaffold_474_17
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19417..20256)
DNA (840bp) protein (280aa)
Chromosome segregation and condensation protein ScpA n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LRF8_9BURK
Segregation and condensation protein A {ECO:0000256|SAAS:SAAS00093938}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatily
scpA; segregation and condensation protein A ScpA
cn_combo_scaffold_474_18
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20273..20479)
DNA (207bp) protein (69aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WUF2_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR69171.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
cn_combo_scaffold_474_19
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20560..22671
DNA (2112bp) protein (704aa)
Na+/solute symporter n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XXH6_LEPCP
Na+/solute symporter {ECO:0000313|EMBL:KDB53975.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM
Na+/solute symporter
cn_combo_scaffold_474_20
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22671..22979
DNA (309bp) protein (103aa)
membrane protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000372476C
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
hypothetical protein
cn_combo_scaffold_474_21
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22980..24671)
DNA (1692bp) protein (564aa)
Sulfate transporter n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LUV8_9BURK
Sulfate transporter {ECO:0000313|EMBL:EGJ12126.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-
bicA; bicarbonate transporter BicA
cn_combo_scaffold_474_22
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24885..25961)
DNA (1077bp) protein (359aa)
putative serine/threonine kinase (EC:2.7.1.-)
Serine/threonine protein kinase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WPV3_9BURK
ppkA-6; type VI secretion system Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
cn_combo_scaffold_474_23
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(26031..28103)
DNA (2073bp) protein (691aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001329}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:
metG; methionyl-tRNA synthetase MetG (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LUW2_9BURK
cn_combo_scaffold_474_24
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28269..29363
DNA (1095bp) protein (365aa)
ATP-binding protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000373E1F8
Cell division inhibitor MinD {ECO:0000313|EMBL:EWS65179.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenopha
iron sulfur binding protein
cn_combo_scaffold_474_25
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29351..30313)
DNA (963bp) protein (321aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XXU9_LEPCP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB32718.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodni
cn_combo_scaffold_474_26

Not on your lists

30385..31293
DNA (909bp) protein (303aa)
anaerobic benzoate catabolism transcriptional regulator (EC:2.7.1.71)
Transcriptional regulator XRE family n=1 Tax=uncultured microorganism RepID=F8UH03_9ZZZZ
Transcriptional regulator XRE family {ECO:0000313|EMBL:AEI30310.1}; TaxID=358574 species="unclassified sequences; environmental samples.;" source="uncultured microorganism.;"
cn_combo_scaffold_474_27
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31340..31675)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LR42_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ10810.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
hypothetical protein
cn_combo_scaffold_474_28
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31672..33945)
DNA (2274bp) protein (758aa)
Serine/threonine protein kinase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LR41_9BURK
Serine/threonine protein kinase {ECO:0000313|EMBL:EGJ10809.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2
putative serine/threonine protein kinase
cn_combo_scaffold_474_29
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33948..34694)
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002EC91FA
short-chain dehydrogenase/reductase SDR Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
short-chain dehydrogenase/reductase SDR
cn_combo_scaffold_474_30
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34753..35247
DNA (495bp) protein (165aa)
hypothetical protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
hypothetical protein id=5079438 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hylemonella gracilis genus=Hylemonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Displaying items 1-30 of 97 in total

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