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cn_combo_scaffold_486

Alias: RUB134_18

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_486_1
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..116)
DNA (114bp) protein (38aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W5N2_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM41557.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain
cn_combo_scaffold_486_2
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(154..1851)
DNA (1698bp) protein (566aa)
Phage integrase family protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W5N1_ACISJ
phage integrase family protein rbh
Phage integrase family protein {ECO:0000313|EMBL:ABM41556.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp.
cn_combo_scaffold_486_3
unknown

Not on your lists

comp(2641..3906)
DNA (1266bp) protein (422aa)

This feature has no annotations

cn_combo_scaffold_486_4
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3973..4827)
DNA (855bp) protein (285aa)
Methyltransferase type 11 n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DKN7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF00207.1}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkali
cn_combo_scaffold_486_5
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4840..5199)
DNA (360bp) protein (120aa)
Transposase of ISCARN94, IS1595 family IS1595 group n=1 Tax=mine drainage metagenome RepID=E6QQB5_9ZZZZ
transposase
Transposase {ECO:0000313|EMBL:EWS56609.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
cn_combo_scaffold_486_6
Aquincola tertiaricarbonis, Aquincola, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5393..6892)
DNA (1500bp) protein (500aa)
Tnp n=1 Tax=Aquincola tertiaricarbonis RepID=M4PPA0_9BURK
Tnp {ECO:0000313|EMBL:AGH08175.1}; TaxID=391953 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquincola.;" source="Aquincola tertiaricarbonis.;"
GTPase SAR1 and related small G protein
cn_combo_scaffold_486_7
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7161..7487)
DNA (327bp) protein (109aa)
Plasmid stabilization system protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WV03_9BURK
Plasmid stabilization system protein {ECO:0000313|EMBL:EHR69780.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;
plasmid stabilization system protein
cn_combo_scaffold_486_8
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7484..7720)
DNA (237bp) protein (79aa)
Putative transcriptional regulator, CopG/Arc/MetJ family n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W5L9_ACISJ
CopG/Arc/MetJ family transcriptional regulator
Putative transcriptional regulator, CopG/Arc/MetJ family {ECO:0000313|EMBL:ABM41544.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.
cn_combo_scaffold_486_9
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7823..10762)
DNA (2940bp) protein (980aa)
Transposase Tn3 family protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W5L8_ACISJ
Transposase Tn3 family protein {ECO:0000313|EMBL:ABM41543.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp.
transposase Tn3 family protein
cn_combo_scaffold_486_10
unknown

Not on your lists

10957..11412
DNA (456bp) protein (152aa)

This feature has no annotations

cn_combo_scaffold_486_11
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11431..12822)
DNA (1392bp) protein (464aa)
L-serine ammonia-lyase (EC:4.3.1.17)
L-serine dehydratase, iron-sulfur-dependent, single chain form n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WIM9_9BURK
L-serine dehydratase, iron-sulfur-dependent, single chain form {ECO:0000313|EMBL:EHR72396.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderi
cn_combo_scaffold_486_12
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12851..15748)
DNA (2898bp) protein (966aa)
glycine dehydrogenase; K00281 glycine dehydrogenase [EC:1.4.4.2] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
gcvP; glycine dehydrogenase GcvP (EC:1.4.4.2)
Glycine dehydrogenase (decarboxylating) n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HPJ8_RUBGI
cn_combo_scaffold_486_13
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15762..16136)
DNA (375bp) protein (125aa)
Glycine cleavage system H protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSA8_9BURK
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilytic
gcvH; glycine cleavage system H protein GcvH
cn_combo_scaffold_486_14
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16175..17308)
DNA (1134bp) protein (378aa)
gcvT; aminomethyltransferase (EC:2.1.2.10)
Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|RuleBase:RU003981};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;"
Aminomethyltransferase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HPK0_RUBGI
cn_combo_scaffold_486_15
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17684..19504)
DNA (1821bp) protein (607aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WRT9_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR73386.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacter
GETHR pentapeptide
cn_combo_scaffold_486_16
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19586..20587)
DNA (1002bp) protein (334aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIJ6_9BURK
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EIK89036.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogen
inner-membrane translocator
cn_combo_scaffold_486_17
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20592..21470)
DNA (879bp) protein (293aa)
Inner-membrane translocator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIJ7_9BURK
Inner-membrane translocator {ECO:0000313|EMBL:EIK89037.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga
inner-membrane translocator
cn_combo_scaffold_486_18
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21532..22749)
DNA (1218bp) protein (406aa)
ABC transporter permease n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI000311E8CB
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EIK89038.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="
extracellular ligand-binding receptor
cn_combo_scaffold_486_19
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22814..23524)
DNA (711bp) protein (237aa)
ABC transporter-like protein {ECO:0000313|EMBL:EIK89039.1}; EC=3.6.1.3 {ECO:0000313|EMBL:EIK89039.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadace
histidinol dehydrogenase n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00031DD4FC
branched chain amino acid ABC transporter ATP-binding protein
cn_combo_scaffold_486_20
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23548..24324)
DNA (777bp) protein (259aa)
ABC transporter-like protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S0Y9_9BURK
Amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:KDP88390.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" sou
Branched-chain amino acid transport ATP-binding protein LivG
cn_combo_scaffold_486_21
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24512..26158
DNA (1647bp) protein (549aa)
Putative CoA ligase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSB0_9BURK
AMP-dependent synthetase and ligase
Putative CoA ligase {ECO:0000313|EMBL:EGJ11228.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-
cn_combo_scaffold_486_22
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26223..26999
DNA (777bp) protein (259aa)
enoyl-CoA hydratase/isomerase (EC:4.2.1.17)
Enoyl-CoA hydratase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSF9_9BURK
Enoyl-CoA hydratase {ECO:0000313|EMBL:EGJ11277.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-
cn_combo_scaffold_486_23
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27097..28770)
DNA (1674bp) protein (558aa)
putative electron transfer flavoprotein-ubiquinone oxidoreductase (EC:1.5.5.1)
Putative electron transfer flavoprotein-ubiquinone oxidoreductase {ECO:0000313|EMBL:BAL94941.1}; EC=1.5.5.1 {ECO:0000313|EMBL:BAL94941.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteoba
Putative electron transfer flavoprotein-ubiquinone oxidoreductase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HPK4_RUBGI
cn_combo_scaffold_486_24
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28950..29732
DNA (783bp) protein (261aa)
putative gluconate 5-dehydrogenase (EC:1.1.1.69)
Short chain dehydrogenase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSG3_9BURK
Short chain dehydrogenase {ECO:0000313|EMBL:EGJ11281.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATC
cn_combo_scaffold_486_25
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29755..30423
DNA (669bp) protein (223aa)
UPF0502 protein RGE_16030 n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HPK7_RUBGI
hypothetical protein
UPF0502 protein RGE_16030 {ECO:0000256|HAMAP-Rule:MF_01584}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain N
cn_combo_scaffold_486_26
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30459..30878
DNA (420bp) protein (140aa)
Thioesterase superfamily protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HPK8_RUBGI
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:BAL94945.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strai
cn_combo_scaffold_486_27
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30891..31553)
DNA (663bp) protein (221aa)
LuxR family transcriptional regulator n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034807B4
LuxR family transcriptional regulator Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
LuxR family transcriptional regulator
cn_combo_scaffold_486_28
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31645..32355
DNA (711bp) protein (237aa)
3-oxoacid CoA-transferase (EC:2.8.3.5); K01028 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
3-oxoacid CoA-transferase (EC:2.8.3.5)
3-oxoacid CoA-transferase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SFS9_METPP
cn_combo_scaffold_486_29
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32357..32995
DNA (639bp) protein (213aa)
3-oxoacid CoA-transferase subunit B (EC:2.8.3.5); K01029 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
3-oxoacid CoA-transferase subunit B (EC:2.8.3.5)
3-oxoacid CoA-transferase subunit B n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSG9_9BURK
cn_combo_scaffold_486_30
Emmonsia crescens, Emmonsia, Onygenales, Eurotiomycetidae, Ascomycota, Fungi

Not on your lists

33026..33271
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Caenorhabditis japonica RepID=H2W445_CAEJA
Uncharacterized protein {ECO:0000313|EMBL:KKZ58470.1}; TaxID=1247875 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ajellomycetaceae; Emm
NLP/P60 protein
Displaying items 1-30 of 77 in total

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