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cn_combo_scaffold_785

Alias: RUB134_21

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Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_785_trna_1
unknown

Not on your lists

comp(317..388)
DNA (72bp)
transferRNA
cn_combo_scaffold_785_1
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(447..1160)
DNA (714bp) protein (238aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7)
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:EWS55750.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EWS55750.1};; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methy
DNA polymerase III, epsilon subunit n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SI23_METPP
cn_combo_scaffold_785_2
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1157..1972)
DNA (816bp) protein (272aa)
lgt; prolipoprotein diacylglyceryl transferase Lgt (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=983917
Prolipoprotein diacylglyceryl transferase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HQC0_RUBGI
cn_combo_scaffold_785_3
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2121..3803
DNA (1683bp) protein (561aa)
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS
dihydroxy-acid dehydratase n=1 Tax=Caldimonas manganoxidans RepID=UPI0003815C49
cn_combo_scaffold_785_4
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3844..4128)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034D97E0
Putative uncharacterized protein {ECO:0000313|EMBL:EHR71613.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
cn_combo_scaffold_785_5
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4159..6141)
DNA (1983bp) protein (661aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-R
acsA; acetyl-coenzyme A synthetase AcsA (EC:6.2.1.1)
acetyl-CoA synthetase n=1 Tax=Caldimonas manganoxidans RepID=UPI00036AF3E8
cn_combo_scaffold_785_6
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6442..7989
DNA (1548bp) protein (516aa)
fumarate hydratase class I (EC:4.2.1.2)
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WPL8_9BURK
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily {ECO:0000313|EMBL:EHR71617.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacter
cn_combo_scaffold_785_7
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8047..10806)
DNA (2760bp) protein (920aa)
putative diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains) (EC:2.7.7.65)
Putative diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains) {ECO:0000313|EMBL:CAZ87530.1}; EC=2.7.7.65 {ECO:0000313|EMBL:CAZ87530.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betapr
Putative diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CKR2_THIA3
cn_combo_scaffold_785_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10829..11326)
DNA (498bp) protein (166aa)
Uncharacterized protein id=4141945 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K02456 general secretion pathway protein G Tax=GWA2_Rokubacteria_73_35_curated
type II secretory pathway, pseudopilin PulG
cn_combo_scaffold_785_9
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11498..12433)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUV9_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL96796.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
cn_combo_scaffold_785_10
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12476..13402
DNA (927bp) protein (309aa)
Putative MoxR like protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LTG2_9BURK
Putative MoxR like protein {ECO:0000313|EMBL:EGJ11630.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = AT
ATPase
cn_combo_scaffold_785_11
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13408..14367
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUW1_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL96798.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
cn_combo_scaffold_785_12
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14426..16465
DNA (2040bp) protein (680aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUW2_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL96799.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
cn_combo_scaffold_785_13
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16520..17635
DNA (1116bp) protein (372aa)
membrane-bound lytic murein transglycosylase B (EC:3.2.1.-)
Lytic murein transglycosylase B n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LMA1_9BURK
Lytic murein transglycosylase B {ECO:0000313|EMBL:EGJ09469.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2
cn_combo_scaffold_785_14
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17635..18033
DNA (399bp) protein (133aa)
lactoylglutathione lyase (EC:4.4.1.5)
Lactoylglutathione lyase {ECO:0000313|EMBL:EWS54107.1}; EC=4.4.1.5 {ECO:0000313|EMBL:EWS54107.1};; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;"
Lactoylglutathione lyase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SJY9_METPP
cn_combo_scaffold_785_15
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18070..18624
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J2L5H8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL80483.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="P
hypothetical protein
cn_combo_scaffold_785_16
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18646..19233
DNA (588bp) protein (196aa)
Uncharacterized protein involved in cation transport n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WLD2_9BURK
Uncharacterized protein involved in cation transport {ECO:0000313|EMBL:EHR70453.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacte
hypothetical protein
cn_combo_scaffold_785_17
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19234..19842)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUV1_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL96788.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
cn_combo_scaffold_785_18
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20081..20716
DNA (636bp) protein (212aa)
pdxH; pyridoxine/pyridoxamine 5'-phosphate oxidase PdxH (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUV2_RUBGI
cn_combo_scaffold_785_19
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20742..21632)
DNA (891bp) protein (297aa)
Putative metalloprotease n=1 Tax=Variovorax sp. CF313 RepID=J2JR68_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KDB51613.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans D
hypothetical protein
cn_combo_scaffold_785_20
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21661..22230)
DNA (570bp) protein (190aa)
dcd; deoxycytidine triphosphate deaminase Dcd (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
dcd; deoxycytidine triphosphate deaminase Dcd (EC:3.5.4.13)
deoxycytidine triphosphate deaminase n=1 Tax=Thiomonas sp. FB-6 RepID=UPI000360276C
cn_combo_scaffold_785_21
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22433..22942
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LUX4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ12142.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
hypothetical protein
cn_combo_scaffold_785_22
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22946..23341)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK53_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK89593.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp.
hypothetical protein
cn_combo_scaffold_785_23
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24186..25055
DNA (870bp) protein (290aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;"
Glycerol-3-phosphate dehydrogenase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WR55_9BURK
glpD; glycerol-3-phosphate dehydrogenase
cn_combo_scaffold_785_24
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25098..25529)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00037604C0
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydr
glycine cleavage system H protein
cn_combo_scaffold_785_25
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25690..27624)
DNA (1935bp) protein (645aa)
Selenocysteine-specific translation elongation factor n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK55_9BURK
Selenocysteine-specific translation elongation factor {ECO:0000313|EMBL:EIK89595.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga
selenocysteine-specific translation elongation factor
cn_combo_scaffold_785_26
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27621..29075)
DNA (1455bp) protein (485aa)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine sy
selA; L-seryl-tRNA(Ser) selenium transferase SelA (EC:2.9.1.1)
L-seryl-tRNA(Sec) selenium transferase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK57_9BURK
cn_combo_scaffold_785_27
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29146..30186)
DNA (1041bp) protein (347aa)
Protein FdhE homolog n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK58_9BURK
Protein FdhE homolog {ECO:0000256|HAMAP-Rule:MF_00611}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp
formate dehydrogenase accessory protein
cn_combo_scaffold_785_28
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30229..30849)
DNA (621bp) protein (207aa)
Formate dehydrogenase, gamma subunit n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK59_9BURK
Formate dehydrogenase, gamma subunit {ECO:0000313|EMBL:EIK89599.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydro
formate dehydrogenase subunit gamma
cn_combo_scaffold_785_29
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30849..31724)
DNA (876bp) protein (292aa)
Formate dehydrogenase, iron-sulfur subunit {ECO:0000313|EMBL:EIK89600.1}; EC=1.2.1.2 {ECO:0000313|EMBL:EIK89600.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales
Formate dehydrogenase, iron-sulfur subunit n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK60_9BURK
formate dehydrogenase subunit beta
Displaying items 1-30 of 73 in total

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