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cn_combo_scaffold_2912

Alias: RUB134_30

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2912_1
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(215..562)
DNA (348bp) protein (116aa)
Transcriptional regulator, XRE family n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MH37_ACIET
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACM34665.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovor
cn_combo_scaffold_2912_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

810..2051
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000379E777
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU98243.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus den
cn_combo_scaffold_2912_3
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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2055..3017
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00037365C8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP47302.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
cn_combo_scaffold_2912_trna_1
unknown

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comp(3285..3357)
DNA (73bp)
transferRNA
cn_combo_scaffold_2912_4
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3412..4131)
DNA (720bp) protein (240aa)
Two component transcriptional regulator, Fis family n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXR0_RUBGI
Fis family two component transcriptional regulator rbh
Two component transcriptional regulator, Fis family {ECO:0000313|EMBL:BAL97797.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax
cn_combo_scaffold_2912_5
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4139..6454)
DNA (2316bp) protein (772aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" sourc
ntrY; nitrogen regulation protein NtrY (EC:2.7.13.3)
Multi-sensor signal transduction histidine kinase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLG2_9BURK
cn_combo_scaffold_2912_6
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6465..7130)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLG3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ09181.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
hypothetical protein
cn_combo_scaffold_2912_7
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7147..8430)
DNA (1284bp) protein (428aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkho
sun; Sun domain protein (EC:2.1.1.176)
Sun protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLG4_9BURK
cn_combo_scaffold_2912_8
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8501..9244
DNA (744bp) protein (248aa)
folE; GTP cyclohydrolase I FolE (EC:3.5.4.16)
GTP cyclohydrolase I n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLG5_9BURK
GTP cyclohydrolase I {ECO:0000313|EMBL:EGJ09183.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA
cn_combo_scaffold_2912_9
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9266..9691
DNA (426bp) protein (142aa)
BLUF domain protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXR5_RUBGI
BLUF domain-containing protein
BLUF domain protein {ECO:0000313|EMBL:BAL97802.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245
cn_combo_scaffold_2912_10
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9772..10404)
DNA (633bp) protein (211aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {
Uracil phosphoribosyltransferase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XW63_LEPCP
uracil phosphoribosyltransferase rbh
cn_combo_scaffold_2912_11
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10401..11498)
DNA (1098bp) protein (366aa)
hypothetical protein n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI00037F5FFF
2-nitropropane dioxygenase
Tax=BJP_08E140C01_Burkholderiales_65_30
cn_combo_scaffold_2912_12
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11526..13001)
DNA (1476bp) protein (492aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J3CYT4_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJL81269.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF31
cn_combo_scaffold_2912_13
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12994..14262)
DNA (1269bp) protein (423aa)
ribA; GTP cyclohydrolase II RibA (EC:3.5.4.25) rbh
GTP cyclohydrolase II n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WHX6_9BURK
GTP cyclohydrolase II {ECO:0000313|EMBL:EHR70590.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
cn_combo_scaffold_2912_14
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14372..14998)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. PBA RepID=I9W9S0_9RALS
hypothetical protein Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
hypothetical protein
cn_combo_scaffold_2912_15
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15013..15414)
DNA (402bp) protein (134aa)
oxidoreductase n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F62A7D
hypothetical protein Tax=CG_Rhodof_02
hypothetical protein
cn_combo_scaffold_2912_16
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15636..16430)
DNA (795bp) protein (265aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:3.1.11.2)
Exodeoxyribonuclease III n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WL08_9BURK
Exodeoxyribonuclease III {ECO:0000313|EMBL:EHR73751.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
cn_combo_scaffold_2912_17
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16446..17114
DNA (669bp) protein (223aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=
Orotate phosphoribosyltransferase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XWV2_LEPCP
cn_combo_scaffold_2912_18
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17115..17852
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPC1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ10189.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
hypothetical protein
cn_combo_scaffold_2912_19
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17883..19346)
DNA (1464bp) protein (488aa)
gatB; putative aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.-
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPC2_9BURK
cn_combo_scaffold_2912_20
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19348..20889)
DNA (1542bp) protein (514aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=987059
gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A GatA (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPC3_9BURK
cn_combo_scaffold_2912_21
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20886..21185)
DNA (300bp) protein (100aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_0012
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WL02_9BURK
gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C
cn_combo_scaffold_2912_22
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21419..22462
DNA (1044bp) protein (348aa)
Rod shape-determining protein MreB n=2 Tax=Rubrivivax RepID=I0HYB3_RUBGI
mreB; rod shape-determining protein MreB
Rod shape-determining protein MreB {ECO:0000313|EMBL:EGJ10193.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus
cn_combo_scaffold_2912_23
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22489..23427
DNA (939bp) protein (313aa)
Cell shape-determining protein MreC n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPC6_9BURK
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkho
mreC; rod shape-determining protein MreC
cn_combo_scaffold_2912_24
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23424..23945
DNA (522bp) protein (174aa)
Rod shape-determining protein MreD n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HYB1_RUBGI
mreD; rod shape-determining protein MreD; K03571 rod shape-determining protein MreD Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
mreD; rod shape-determining protein MreD
cn_combo_scaffold_2912_25
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23986..26031
DNA (2046bp) protein (682aa)
mrdA; penicillin-binding protein 2 MrdA (EC:2.4.1.129); K05515 penicillin-binding protein 2 Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
mrdA; penicillin-binding protein 2 MrdA (EC:2.4.1.129) rbh
Penicillin-binding protein 2 MrdA n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HYB0_RUBGI
cn_combo_scaffold_2912_26
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26022..27188
DNA (1167bp) protein (389aa)
Rod shape-determining protein RodA n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HYA9_RUBGI
rodA; rod shape-determining protein RodA rbh
Rod shape-determining protein RodA {ECO:0000313|EMBL:BAL97996.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (str
Displaying 27 items

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